View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_11 (Length: 468)
Name: NF15414_low_11
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 440
Target Start/End: Complemental strand, 22689956 - 22689547
Alignment:
| Q |
25 |
tgagcattaaattcatacaaagatagagccaaaataaattgataaaactgccgaaatataaaatacccagaaatgac----------agattacaaggca |
114 |
Q |
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| T |
22689956 |
tgagcattaaattgatacaat-ataaagccaaactaagttgataaaactgctgaaatataacatacccagagatgagtatagaatatagattacaaggca |
22689858 |
T |
|
| Q |
115 |
cagagagataaaaatccaatggcaaaatataattttcttaggatgatttaaaataattagattttattatcagaatcttccatttaggtgggatcacaac |
214 |
Q |
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||||| |||||||| |||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
22689857 |
cagagtgataaaaagccaatggcaaaatataattttcataggatgacttaatataatcagattttattatcagaatcttccatctaggtgggatctgaac |
22689758 |
T |
|
| Q |
215 |
aagccatc---aattcagttatagaaattagaggaacacagtgagcagagaataactatcatatttatcctaaaactaactaaatccacatgctattatg |
311 |
Q |
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|||||||| ||||||||||||||||||| || |||||| ||||||||||||||||| |||||||| ||| || ||||||| |
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| T |
22689757 |
aagccatcgtcaattcagttatagaaattatagaaacacaatgagcagagaataacta-------------------aactaaatacacgtgatattatg |
22689677 |
T |
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| Q |
312 |
atcttcagcaaacacattatgaaccaggtgat-aaaaatagattacctttttgtcaaagcatctttcttttctcttttgacgaaattttgtcaaggcagc |
410 |
Q |
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| T |
22689676 |
atcttccgcaaacacattatgaacaaagtaattaaaaatagattacctttttgtcaaagcatctttcttttctcttttgacgaaattttgtcaaggcagc |
22689577 |
T |
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| Q |
411 |
ctccctcaatgcaattcgttcttcatatga |
440 |
Q |
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| T |
22689576 |
ctccctcaatgcaattcgttctgcatatga |
22689547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 40276835 - 40276881
Alignment:
| Q |
25 |
tgagcattaaattcatacaaagatagagccaaaataaattgataaaa |
71 |
Q |
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| T |
40276835 |
tgagcattaaattcatacaaagatagagccaaaataaattgataaaa |
40276881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 43532329 - 43532283
Alignment:
| Q |
25 |
tgagcattaaattcatacaaagatagagccaaaataaattgataaaa |
71 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43532329 |
tgagcattaaattcatataaagatagagccaaaataaattgataaaa |
43532283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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