View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_12 (Length: 463)
Name: NF15414_low_12
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_12 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 89352 - 89806
Alignment:
| Q |
1 |
caacacggtagtcacagtgaagactcccaacagctccatatttaattttcttataattaaatatcttgatgatttcttatcttttgggataaaattttag |
100 |
Q |
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| T |
89352 |
caacacggtagtcacagtgaagactcccaacagctccatatttaattttcttataattaaatatcttgacgatttcttatcttttgggataaaattttag |
89451 |
T |
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| Q |
101 |
ctagggatacactcatatatataaaaaattattcaaataaaaactgaatgctaatcaaatttattgggctatgaaaaatttgcccaaattaatannnnnn |
200 |
Q |
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| T |
89452 |
ctagggatacactcatatatataaaaatttattcaaataaaaactgaatgctaatcaaatttattgggctatgaaaaatttgcccaaattaatttttttt |
89551 |
T |
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| Q |
201 |
nnngtaaagttacactcaagacggatgtaatgttacatgaatgttacactcggggatggggtattcataactaattatttgtgtgcgaaaagtaatagtg |
300 |
Q |
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| T |
89552 |
tttgtaaagttacactcaagatggatgtaatgttacatgaatgttacactcggggatggggtattcataactaattatttgtgtgggaaaagtaatagtg |
89651 |
T |
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| Q |
301 |
tnnnnnnnnnttgtctaataaaattaaggactatatatgtaatatttagtcgaaaataacaatttttatagttatattagttcaagtccatttataacct |
400 |
Q |
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| T |
89652 |
taaaaaaaatttgtctaataaaattaaggactatatatgtaatatttagtcgaaaataacaatttttatagttatattagttcaagtccatttataacct |
89751 |
T |
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| Q |
401 |
taactattgttaattggaagaaaatcacccaactacttcctctaatatttcattt |
455 |
Q |
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| T |
89752 |
taactattgttaattggaagaaaatcacccaactacttcctctaatatttcattt |
89806 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 39721555 - 39721605
Alignment:
| Q |
375 |
tattagttcaagtccatttataaccttaactattgttaattggaagaaaat |
425 |
Q |
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| T |
39721555 |
tattagttcaagttcatttgtaaccctaacaattgttaattggaataaaat |
39721605 |
T |
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