View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_14 (Length: 430)
Name: NF15414_low_14
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 10508383 - 10508791
Alignment:
| Q |
1 |
tcaagaacaattaaatattatacgtttctaaatgtgaactgaagttagatgctctgtgtatatagaatatatagacaaacacagaagattattattaaag |
100 |
Q |
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| T |
10508383 |
tcaagaacaattaaatattatacgtttctaaatgtgaactgaagttagatgctctgtgtatatagaatatatagacaaacacagaagattattattaaag |
10508482 |
T |
|
| Q |
101 |
acagttttacatttaaagttaagtagctctaaaagaattttgaattcannnnnnnnnnncctacaacgatgttactgaagttctctttataaaataaact |
200 |
Q |
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| T |
10508483 |
acagttttacatttaaagt-aagtagctctaaaagaattttgaattcattttttttt---ctacaacgatgttactgaagttctctttataaaataaact |
10508578 |
T |
|
| Q |
201 |
aaattgttcaagtataaataaaactacaaaacacactttatatgaagcaacacaattgtgatgtacaacagcataactgtgctccgctatccaagattga |
300 |
Q |
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| T |
10508579 |
aaattgttcaagtataaataaaactacaaaacacattttatatgaagcaacacaattgtgatgtacaaccgcataactgtgctccactatccaagattga |
10508678 |
T |
|
| Q |
301 |
caatagtgactttgcaatatagtggtttttccgctatctactatacaactatagttttggggtttggcgcaacagcccactcgctatttgggattaacaa |
400 |
Q |
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| T |
10508679 |
caatagtgactttgca--atagtggtttttccgctatctactataccactatagttttggggtttggcgcaacaacccactcgctatttgggattaacaa |
10508776 |
T |
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| Q |
401 |
cataagaatcgatga |
415 |
Q |
| |
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||| ||||||||||| |
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| T |
10508777 |
cattagaatcgatga |
10508791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10493832 - 10493884
Alignment:
| Q |
9 |
aattaaatattatacgtttctaaatgtgaactgaagttagatgctctgtgtat |
61 |
Q |
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| T |
10493832 |
aattaaatattatacgtttctaaatctgaactgaagttagatggtctgtgtat |
10493884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 7477664 - 7477598
Alignment:
| Q |
169 |
atgttactgaagttctctttataaaataaactaaattgttcaagtataaataaaactacaaaacaca |
235 |
Q |
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| T |
7477664 |
atgttattgaagttctctttataaaataaacaaaattgttcaactagcaatgaaactacaaaacaca |
7477598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 7477745 - 7477663
Alignment:
| Q |
9 |
aattaaatattatacgtttctaaatgtgaa-ctgaagttagatgctctgtgtatatagaatatatagacaaacacagaagattat |
92 |
Q |
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| T |
7477745 |
aattaaatattatatgtttctaaatctgaaactgaagttagatgctctgtg--tatagaatatagagaaacacgcagaagattat |
7477663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 10546015 - 10546123
Alignment:
| Q |
9 |
aattaaatattatacgtttctaaatgtgaactgaagttagatgctctgtgtatatagaatatatagacaaacacagaa-gattattattaaagacagttt |
107 |
Q |
| |
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| T |
10546015 |
aattaaatattaaccgtttctaaatctaaattgaagttagactctctgtgtata--gaa-atatagacaaactcacaaagattgttattaaagacaattt |
10546111 |
T |
|
| Q |
108 |
tacatttaaagt |
119 |
Q |
| |
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|||||||||||| |
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|
| T |
10546112 |
tacatttaaagt |
10546123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 10519305 - 10519375
Alignment:
| Q |
161 |
ctacaacgatgttactgaagttctctttataaaataaactaaattgttcaagtataaataaaactacaaaac |
232 |
Q |
| |
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| T |
10519305 |
ctacaatgaagttactgaagttgtctttataaattaaacaaaattgttcaagtagcaat-aaactacaaaac |
10519375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 10493912 - 10493977
Alignment:
| Q |
169 |
atgttactgaagttctctttataaaataaactaaattgttcaagtataaataaaactacaaaacaca |
235 |
Q |
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| T |
10493912 |
atgttattgaagttctcttta-aaaataaacaaaattgttcaactagcaatgaaactacaaaacaca |
10493977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 10464393 - 10464464
Alignment:
| Q |
161 |
ctacaacgatgttactgaagttctctttataaaataaactaaa-ttgttcaagtataaataaaactacaaaa |
231 |
Q |
| |
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|||||| |||||||||||| ||||| ||||||| |||| ||| ||||||||||| ||||||||||||||| |
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| T |
10464393 |
ctacaatgatgttactgaatttctcattataaactaaaaaaaaattgttcaagtagcaataaaactacaaaa |
10464464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 10489757 - 10489804
Alignment:
| Q |
9 |
aattaaatattatacgtttctaaatgtgaactgaagttagatgctctg |
56 |
Q |
| |
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|||||||| ||| |||||||||||| ||||||||||||||| |||||| |
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|
| T |
10489757 |
aattaaatgttacacgtttctaaatctgaactgaagttagaagctctg |
10489804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 10489856 - 10489909
Alignment:
| Q |
182 |
tctctttataaaataaactaaattgttcaagtataaataaaactacaaaacaca |
235 |
Q |
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||||||||| |||||||| ||||||||||| || |||||||||| |||||||| |
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| T |
10489856 |
tctctttatgaaataaacaaaattgttcaactagcaataaaactagaaaacaca |
10489909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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