View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_15 (Length: 426)
Name: NF15414_low_15
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 417
Target Start/End: Original strand, 37780518 - 37780895
Alignment:
| Q |
20 |
agtagagacaaattaacatgagatgtgtgcattagattaactactagaccaaaatggttctggcnnnnnnn-gttatgaaggaagaagaaaccaaagatt |
118 |
Q |
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| T |
37780518 |
agtagagacaaattaacatgagatgcgtgcattagattaactactaaaccaaaatggttctgccttttttttgttatgaaggaagaagaaaccaaagatt |
37780617 |
T |
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| Q |
119 |
acttggaaggttctttatatgacatttctttgtggattgtttgggtatgctactgaattgttcacctttttcttccatatagtattttcggtcatataaa |
218 |
Q |
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| T |
37780618 |
acttggaaggttctttatatgacatttctttgtggattgtttgggtatgctactgaattgttcacctttttcttccattta-----------------aa |
37780700 |
T |
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| Q |
219 |
gagcctttatatgacattaattaaagatactaatatggtcaatgtatgttccaggggaagtttacttctaaacctttatggcatgggactgacttttatt |
318 |
Q |
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| T |
37780701 |
gagtctttatatgacatta----aagatactaatatggtcaatgtatgttccaggggaagtttacttctaaacctttatggcatgggactgacttttatt |
37780796 |
T |
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| Q |
319 |
tcagcaacgtttatgatgtcgttgtataaccttattccaggagttacctttatcatggccatatccttcgggtactcacacttttcactttagaataat |
417 |
Q |
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| T |
37780797 |
tcagcaacgtttatgatgtcattgtacaaccttattccaggagttaccttcatcatggccatatccttcgggtactcactcttttcactttagaataat |
37780895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 383
Target Start/End: Original strand, 37807470 - 37807619
Alignment:
| Q |
234 |
attaattaaagatactaatatggtcaatgta-tgttccaggggaagtttacttctaaacctttatggcatgggactgacttttatttcagcaacgtttat |
332 |
Q |
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| T |
37807470 |
attaattaaagatactaatatggtta-tgtaatgttgcaggggaagtttatttctaaacctttatggcgttgccctcgatttgacttcagcaacgtttat |
37807568 |
T |
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| Q |
333 |
gatgtcgttgtataaccttattccaggagttacctttatcatggccatatc |
383 |
Q |
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| T |
37807569 |
gttgtccatgtccaaccttattccaggaattaccttcatcatggccatatc |
37807619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 37807342 - 37807404
Alignment:
| Q |
109 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtatgctac |
171 |
Q |
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| T |
37807342 |
accaaagattacttggaaggttctttttctttcatttctatgtggattgtttgggtacgctac |
37807404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 37788905 - 37788982
Alignment:
| Q |
91 |
gttatgaaggaagaagaaaccaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtatgc |
168 |
Q |
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| T |
37788905 |
gttatgcaggaaggaaagaccaaagattactcggaatgtgctttctctggcatttctatgcggattgtttgggtatgc |
37788982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 37797152 - 37797209
Alignment:
| Q |
109 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtat |
166 |
Q |
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| T |
37797152 |
accaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtat |
37797209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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