View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_18 (Length: 382)
Name: NF15414_low_18
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 40402612 - 40402951
Alignment:
| Q |
27 |
gaaggaatggaaaattctgataacactgaatgtgttgaaggtgttcggtgtttgaaacggaaagccattgatgatgggttgccaatttccaatggaaatg |
126 |
Q |
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| T |
40402612 |
gaaggaatggaaaattctgataacactgaatgtgttgaaggtgttcggtgtttgaaacggaaagccattgatgatgggttgccaatttccaatggaaatg |
40402711 |
T |
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| Q |
127 |
gtgttgttgaagagagtaggcattcggaaagtgaagctttgaacgacttggcgatgtttgccaatggaagtagtgttgctgatgtggccgaggttttgaa |
226 |
Q |
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| T |
40402712 |
gtgttgttgaagagagtaggcattcggaaagtgaagctttgaatgacttggcgatgtttgccaatggaagtagtgttgctgatgtggccgaggttttgaa |
40402811 |
T |
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| Q |
227 |
aagtttgaaaaatgggctgaatggaaattgtgttgctgaagaggctcgagaat-cggtaagtgaagttgtgaatgatggggcagtgttttccaatggaaa |
325 |
Q |
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| T |
40402812 |
aagtttgaaaaatgggctgaatggaaattgtgttgctgaagaggctcgagaatccggtaagtgaagctgtgaatgatggggcagtgttttccaatggaaa |
40402911 |
T |
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| Q |
326 |
tagtgttgctgatgtagctgaggttttgaaaagtttgagt |
365 |
Q |
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| T |
40402912 |
tagtgttgctgatgtagctgaggttttgaaaagtttgagt |
40402951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 181 - 337
Target Start/End: Original strand, 40402896 - 40403052
Alignment:
| Q |
181 |
tgtttgccaatggaagtagtgttgctgatgtggccgaggttttgaaaagtttgaaaaatgggctgaatggaaattgtgttgctgaagaggctcgagaatc |
280 |
Q |
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| T |
40402896 |
tgttttccaatggaaatagtgttgctgatgtagctgaggttttgaaaagtttgagtaatggggtgaatggaaattgtgttgctgaagaggctcgagaatc |
40402995 |
T |
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| Q |
281 |
ggtaagtgaagttgtgaatgatggggcagtgttttccaatggaaatagtgttgctga |
337 |
Q |
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| T |
40402996 |
gataagtgaagctgtgaatgatagaacggtggttgcaaatggaaattgtgttgctga |
40403052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 40403103 - 40403191
Alignment:
| Q |
244 |
tgaatggaaattgtgttgctgaagaggctcgagaatcggtaagtgaagttgtgaatgatggggcagtgttttccaatggaaatagtgtt |
332 |
Q |
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| T |
40403103 |
tgaatggaagtcgtgttgctaaagaggctcgagaattgataagtgaagctgtgaatgatggggcggtattttcgaatggaaatggtgtt |
40403191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 40403033 - 40403093
Alignment:
| Q |
246 |
aatggaaattgtgttgctgaagaggctcgagaatcggtaagtgaagttgtgaatgatgggg |
306 |
Q |
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| T |
40403033 |
aatggaaattgtgttgctgaagaggctcgagaatcaacaagtgaagctgtaaatgatgggg |
40403093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 40403215 - 40403290
Alignment:
| Q |
284 |
aagtgaagttgtgaatgatggggcagtgttttccaatggaaatagtgttgctgatgtagctgaggttttgaaaagt |
359 |
Q |
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| T |
40403215 |
aagtgaagatgtgaatgatggggtggtgttttcgaatggaaatggggttgctgaagtgcctgtggttttaaaaagt |
40403290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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