View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_19 (Length: 352)
Name: NF15414_low_19
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 331
Target Start/End: Complemental strand, 35844095 - 35843793
Alignment:
| Q |
29 |
aatatgtgctgatcatattcatatgaatacaaattttgatcagagtgtaagtgtgtgtgtatgtgatgacagatattcgaagagtattaaagtatagaat |
128 |
Q |
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| T |
35844095 |
aatatgtgctgatcatattcatatgaatacaaattttgatcagagtgtaagtgtgtgtgtatgtgatgacagatattcgaagagtattaaagtatagaat |
35843996 |
T |
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| Q |
129 |
tggcagagaaaaaataacgtaccnnnnnnntgaaaatggggagagcctatcaatggatattaagaattgtgaaaacatttggttgattttgtccttatat |
228 |
Q |
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| T |
35843995 |
tggcagagaaaaaataacgtaccaaaaaaatgaaaatggggagagcctatcaatggatattaagaattgtgaaaacatttggttgattttgtccttatat |
35843896 |
T |
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| Q |
229 |
atgcattagagttgacattttacaataaactataatgcatacgaatctttcaaagaattagaggtattttttattgtttcatggatgaggacacccaacc |
328 |
Q |
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| T |
35843895 |
atgcattagagttgacattttacaataaactataatgcatacgaatctttcaaagaattagaggtattttttattgtttcatggatgaggacacccaacc |
35843796 |
T |
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| Q |
329 |
tat |
331 |
Q |
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| T |
35843795 |
tat |
35843793 |
T |
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