View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_22 (Length: 342)
Name: NF15414_low_22
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 11296287 - 11296416
Alignment:
| Q |
191 |
tacaatcttcttttgatcattcattatttactaagaaattcggtaattctttcgtagccattttaatttatgttgatgatgttatcattgcaggtaacaa |
290 |
Q |
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| T |
11296287 |
tacaatcttcttttgatcattcattatttactaagaaatttggtaattctttcgtagccattttaatttatgttgatgatattattattgcaggtaacaa |
11296386 |
T |
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| Q |
291 |
tcttcaagaaagtacatatatcaaggcctt |
320 |
Q |
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| T |
11296387 |
tcttcaagaaagtacatatatcaaggcctt |
11296416 |
T |
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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 11296079 - 11296143
Alignment:
| Q |
13 |
aatatccaggttaatttgttgccaggaaactagagatgtatgtaaatgaagtagaaaaaggaaca |
77 |
Q |
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| T |
11296079 |
aatatccaggttaatttgttgccaggaaactagagatgtatgtaaatgaagtagaaaaaggaaca |
11296143 |
T |
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