View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15414_low_23 (Length: 334)

Name: NF15414_low_23
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15414_low_23
NF15414_low_23
[»] chr8 (3 HSPs)
chr8 (142-239)||(18602580-18602677)
chr8 (260-317)||(18602501-18602558)
chr8 (29-90)||(35029441-35029502)
[»] chr3 (2 HSPs)
chr3 (23-96)||(24980473-24980546)
chr3 (29-93)||(52250984-52251048)
[»] scaffold0061 (1 HSPs)
scaffold0061 (29-93)||(64499-64563)
[»] scaffold0017 (1 HSPs)
scaffold0017 (29-93)||(134069-134133)
[»] chr2 (3 HSPs)
chr2 (29-93)||(10688778-10688842)
chr2 (29-93)||(43310475-43310539)
chr2 (29-93)||(26146431-26146495)
[»] scaffold0003 (1 HSPs)
scaffold0003 (29-90)||(367224-367285)
[»] scaffold0016 (1 HSPs)
scaffold0016 (29-93)||(27998-28062)
[»] chr7 (1 HSPs)
chr7 (29-93)||(41805617-41805681)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 18602677 - 18602580
Alignment:
Q  142 aaccggttcgggcgaaccggtttaagatacttttacgaacccagttcatgaaaattcggtaggaattcgtttagaacccagtatcaagcgaaccagac 239  Q
    ||||||||||  |||||||||||  | |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | | ||||||||||    
T  18602677 aaccggttcgcacgaaccggtttgcggtacttttacgaacccatttcatgaaaattcggtaggaattcgtttagaatccagtaaccaacgaaccagac 18602580  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 18602558 - 18602501
Alignment:
Q  260 ttaaactaattaacaatgactcttaagaagaaattccagccttgaaaagctaaagaat 317  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  18602558 ttaaactcattaacgatgactcttgagaagaaattccagccttgaaaagctaaagaat 18602501  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 35029502 - 35029441
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttg 90  Q
    |||||| |||||||||||||||| || | |||||||  ||||| |||||||||||| |||||    
T  35029502 tgtgggtgtgggaggaggagatgttaggggagtgtattattttacttgctaatgtttctttg 35029441  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 24980473 - 24980546
Alignment:
Q  23 ggcgtatgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcaggac 96  Q
    |||||||||||||| |||||||| ||||||| ||  ||||||| |||||||||| |||||||||||||||||||    
T  24980473 ggcgtatgtgggagcgggaggagaagatgctgaggaagtgtaggattttgcttgttaatgttactttgcaggac 24980546  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 52250984 - 52251048
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| | |||||||  ||||| |||||||||||| ||||||||    
T  52250984 tgtgggtgtgggaggaggagatgctaggggagtgtattattttacttgctaatgttgctttgcag 52251048  T

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Target: scaffold0061 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 64499 - 64563
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| |||||||||  ||||| |||| ||||||| ||||||||    
T  64499 tgtgggtgtgggaggaggagatgctaggagagtgtattattttacttggtaatgtttctttgcag 64563  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 134133 - 134069
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| |||||||||  ||||| |||| ||||||| ||||||||    
T  134133 tgtgggtgtgggaggaggagatgctaggagagtgtattattttacttggtaatgtttctttgcag 134069  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 10688842 - 10688778
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| | |||||||  ||||| |||| ||||||| ||||||||    
T  10688842 tgtgggtgtgggaggaggagatgctaggggagtgtattattttacttggtaatgtttctttgcag 10688778  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 43310539 - 43310475
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| | |||||||  ||||| |||| ||||||| ||||||||    
T  43310539 tgtgggtgtgggaggaggagatgctaggggagtgtattattttacttggtaatgtttctttgcag 43310475  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 26146495 - 26146431
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| | |||||||  ||||| |||| | ||||| ||||||||    
T  26146495 tgtgggtgtgggaggaggagatgctaggggagtgtattattttacttggtcatgtttctttgcag 26146431  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 367285 - 367224
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttg 90  Q
    |||||| ||||||||||||||||||| | |||||||  ||||| |||| ||||||| |||||    
T  367285 tgtgggtgtgggaggaggagatgctaggggagtgtattattttacttggtaatgtttctttg 367224  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 28062 - 27998
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| | |||||||  ||||| |||| | ||||| ||||||||    
T  28062 tgtgggtgtgggaggaggagatgctaggggagtgtattattttacttggtcatgtttctttgcag 27998  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 41805617 - 41805681
Alignment:
Q  29 tgtgggagtgggaggaggagatgctaagagagtgtagaattttgcttgctaatgttactttgcag 93  Q
    |||||| ||||||||||||||||||| | ||||||   ||||| |||| ||||||| ||||||||    
T  41805617 tgtgggtgtgggaggaggagatgctaggggagtgtgttattttacttggtaatgtttctttgcag 41805681  T

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