View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_25 (Length: 314)
Name: NF15414_low_25
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 13554616 - 13554900
Alignment:
| Q |
20 |
aaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagactaaggccagaggaactggacttatcaaggccattgagggttacgttt |
119 |
Q |
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| T |
13554616 |
aaatatcacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagactaaggccagaggaactggacttatcaaggccattgagggttacgttt |
13554715 |
T |
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| Q |
120 |
tggcaaatcctgattattaaatgaatctacacttggtttaattttggttgtatcgtgtcatgggaataataattgaagtttatgatatggttgtttaatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13554716 |
tggcaaatcctgattattaaatgaatctacacttggtttaattttggttgtatcgtgtcatgggaataataattgaagtttaagatatggttgtttaatt |
13554815 |
T |
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| Q |
220 |
acatgtgtgtggtagtgtcgggttttgagtggtgttttgggtgaatttgattgggtgtttaagttcaaaatctatgtgatgatgt |
304 |
Q |
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| T |
13554816 |
acatgagtgtggtagtgtcgggttttgagtggtgttttgggtgaatttgattgggtgtttaagttcaaaatctatgtgatgatgt |
13554900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 13537756 - 13537876
Alignment:
| Q |
19 |
gaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagactaaggccagaggaactggacttatcaaggccattgagggttacgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||| |
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| T |
13537756 |
gaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgaaactaagaccaaaggaactggacttatcaaggccattgagggatacgtt |
13537855 |
T |
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| Q |
119 |
ttggcaaatcctgattattaa |
139 |
Q |
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| T |
13537856 |
ttggcaaaccctaattattaa |
13537876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 13530893 - 13531009
Alignment:
| Q |
19 |
gaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagactaaggccagaggaactggacttatcaaggccattgagggttacgtt |
118 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||| |||||||| ||||| |
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| T |
13530893 |
gaaatatcacaccaaaggtgatgcagttctatctgatgcagtacgtgaggagactaaggccaaaggaactggtcttatcaaggctattgagggctacgtc |
13530992 |
T |
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| Q |
119 |
ttggcaaatcctgatta |
135 |
Q |
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|||||||| ||| |||| |
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| T |
13530993 |
ttggcaaaccctaatta |
13531009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 13541797 - 13541913
Alignment:
| Q |
19 |
gaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagactaaggccagaggaactggacttatcaaggccattgagggttacgtt |
118 |
Q |
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|||||| |||||||||||||||||| ||||||||| || || ||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
13541797 |
gaaatatcacaccaaaggtgatgcagttctatctgaagctgtacgtgaggaaactaaggccaaaggaactggacttatcaaggccattgagggttatgtt |
13541896 |
T |
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| Q |
119 |
ttggcaaatcctgatta |
135 |
Q |
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|||||||| ||| |||| |
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| T |
13541897 |
ttggcaaaccctaatta |
13541913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 13537911 - 13537942
Alignment:
| Q |
184 |
aataataattgaagtttatgatatggttgttt |
215 |
Q |
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| T |
13537911 |
aataataattgaagtttatgatatggttgttt |
13537942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 13485813 - 13485857
Alignment:
| Q |
96 |
tcaaggccattgagggttacgttttggcaaatcctgattattaaa |
140 |
Q |
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||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
13485813 |
tcaaggctcttgaaggttacgttttggcaaatcctgattactaaa |
13485857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 13492252 - 13492296
Alignment:
| Q |
96 |
tcaaggccattgagggttacgttttggcaaatcctgattattaaa |
140 |
Q |
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||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
13492252 |
tcaaggctcttgaaggttacgttttggcaaatcctgattactaaa |
13492296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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