View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_26 (Length: 303)
Name: NF15414_low_26
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 5037311 - 5037606
Alignment:
| Q |
10 |
ataatacttatgtagcttaattgcagctgcaatacggctgtaaaaacctaagaacttggtattgcaggtgcaatttcggac------------------- |
90 |
Q |
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| T |
5037311 |
ataatgcttatgcagct-aattgcagctgcaatacggctgtaaaaacctaagaacttggtattgcaggtgcaatttcggacgtgcacctatttttaagac |
5037409 |
T |
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| Q |
91 |
ttgtatgtaatagaaattgtcataaacaatacttacgtgaagcaaacatcggaccaatcatccctttgctgaagtgctgaccagaggtcaatggccttga |
190 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5037410 |
ttgtatgtaatagaaattgttgtaaacaatacttacgtgaagcaaacatcggaccaatcatccctttgctgaagtgctgaccagaggtcaatggccttga |
5037509 |
T |
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| Q |
191 |
cattcatctcatgacacaagtccaaacatgcttctgagtaaagtctacaggattcatttgtcctctttagtggtcccaatacattactgttttgagt |
287 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5037510 |
cattcatgtcatgacacaagtccaaacatgcttctgagtaaagtctacaggattcatttgtcctctttagtggtcccaatatattactgttttgagt |
5037606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 5032296 - 5032397
Alignment:
| Q |
170 |
accagaggtcaatggccttgacattcatctcatgacacaagtccaaacatgcttctgagtaaagtctacaggattcatttgtcctctttagtggtcccaa |
269 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5032296 |
accagaggtcaatggccttgacattcatctcatggcacaaatccaaacatgcttctgaataaagtctacaggattcatttgtcctctttagtggtcccaa |
5032395 |
T |
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| Q |
270 |
ta |
271 |
Q |
| |
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|| |
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| T |
5032396 |
ta |
5032397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 5032175 - 5032242
Alignment:
| Q |
23 |
agcttaattgcagctgcaatacggctgtaaaaacctaagaacttggtattgcaggtgcaatttcggac |
90 |
Q |
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||||||||||| ||||||| ||||| |||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
5032175 |
agcttaattgcggctgcaacacggcagtaaaaacaaaagaacttgatattgcagctgcaatttcggac |
5032242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 5032259 - 5032297
Alignment:
| Q |
88 |
gacttgtatgtaatagaaattgtcataaacaatacttac |
126 |
Q |
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| T |
5032259 |
gacttgtatgtaatagaaattgtgataaacaatacttac |
5032297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 25090497 - 25090603
Alignment:
| Q |
119 |
atacttacgtgaagcaaacatcggaccaatcatccctttgctgaagtgctgaccagaggtcaatggccttgacattcatctcatgacacaagtccaaaca |
218 |
Q |
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|||||||| |||| |||||||| ||||||||| |||| || || ||| ||||| | |||||| |||| | ||||||||| ||||||| |||||||| |
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| T |
25090497 |
atacttacatgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcatctcacgacacaaatccaaaca |
25090596 |
T |
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| Q |
219 |
tgcttct |
225 |
Q |
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||||||| |
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| T |
25090597 |
tgcttct |
25090603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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