View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15414_low_27 (Length: 299)

Name: NF15414_low_27
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15414_low_27
NF15414_low_27
[»] chr1 (3 HSPs)
chr1 (32-283)||(28163889-28164139)
chr1 (27-283)||(28127184-28127441)
chr1 (65-125)||(267887-267947)
[»] chr6 (19 HSPs)
chr6 (82-167)||(27214985-27215070)
chr6 (32-125)||(26656540-26656633)
chr6 (32-125)||(26762511-26762604)
chr6 (68-159)||(25511479-25511570)
chr6 (191-244)||(27604390-27604442)
chr6 (68-150)||(25539093-25539175)
chr6 (65-167)||(26647012-26647114)
chr6 (65-167)||(26752980-26753082)
chr6 (191-283)||(26802850-26802941)
chr6 (68-159)||(25580263-25580354)
chr6 (68-159)||(26056463-26056554)
chr6 (68-159)||(26076433-26076524)
chr6 (191-242)||(26143313-26143364)
chr6 (193-244)||(27427300-27427350)
chr6 (66-125)||(27698134-27698193)
chr6 (176-242)||(25483504-25483570)
chr6 (68-150)||(26143418-26143500)
chr6 (66-151)||(26802995-26803080)
chr6 (66-151)||(28792908-28792993)
[»] chr4 (6 HSPs)
chr4 (176-233)||(18655142-18655199)
chr4 (176-233)||(18723750-18723807)
chr4 (176-233)||(18731169-18731226)
chr4 (181-233)||(18699070-18699122)
chr4 (193-244)||(18074205-18074255)
chr4 (194-244)||(18679250-18679299)
[»] scaffold0003 (1 HSPs)
scaffold0003 (193-244)||(60013-60063)
[»] scaffold0277 (1 HSPs)
scaffold0277 (71-151)||(4265-4345)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 32 - 283
Target Start/End: Original strand, 28163889 - 28164139
Alignment:
Q  32 atccaataggatatttggcaacatgtnnnnnnncacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaat 131  Q
    |||||| ||||||||| |||||||||       |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  28163889 atccaacaggatattttgcaacatgtaaaaaaacacgattgatcctgtcggaggtgcctttgattatctcctgaataaacttgtattcatatatgttaat 28163988  T
Q  132 ctccattaaggtaagttagtgcatacaccaatatcaggatcacaaatacatcatacaactctaactattttgacatataaatatctaatacttgttttaa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  28163989 ctccattaaggtaagttagtgcatacaccaatatcaggatcacaaatacatcatacaactctaactattttgacatataaatatcttatacttg-tttaa 28164087  T
Q  232 aaacataaataaataaaatattttctatttaagctttaagatgaggttattg 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28164088 aaacataaataaataaaatattttctatttaagctttaagatgaggttattg 28164139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 28127184 - 28127441
Alignment:
Q  27 ctgtcatccaataggatatttggcaacatgtnnnnnnncacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctg 126  Q
    |||| |||||| |||||||||||||||||||       ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||     
T  28127184 ctgtaatccaacaggatatttggcaacatgtaagaaaacacgattgatcctgtcggatatgtctttgattatcttctgaataaacttgtattcatatcta 28127283  T
Q  127 ttaatctccattaaggtaagttagtgcatacaccaatatcaggatcacaaatacatcatacaactctaactattttgacatataaatatctaatacttgt 226  Q
    |||||||||| |||| |||||||||||| ||||||||||||| |||| |||||||| |||||||||| |||||||||||||||||||| || |||||||     
T  28127284 ttaatctccaataagataagttagtgcacacaccaatatcagaatcataaatacattatacaactctgactattttgacatataaataccttatacttg- 28127382  T
Q  227 tttaaaaacataaataaat--aaaatattttctatttaagctttaagatgaggttattg 283  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28127383 tttaaaaacataaataaataaaaaatgttttctatttaagctttaagatgaggttattg 28127441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 267887 - 267947
Alignment:
Q  65 cacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatct 125  Q
    ||||| ||||| ||| |||||||| ||||| ||||||   |||||||||||||||||||||    
T  267887 cacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatct 267947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 27215070 - 27214985
Alignment:
Q  82 gagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacaccaatatca 167  Q
    ||||||||||  | ||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||    
T  27215070 gagatgtcttcaactatcttctcaataaacttgtattcatatctgttaatgtccaataagataagttagtgcatacaccaacatca 27214985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 26656633 - 26656540
Alignment:
Q  32 atccaataggatatttggcaacatgtnnnnnnncacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatct 125  Q
    |||||| ||| |||||||||||||||       ||||||||||| |||||||||||||||||| ||| | || |||||||||||||||||||||    
T  26656633 atccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatct 26656540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 26762604 - 26762511
Alignment:
Q  32 atccaataggatatttggcaacatgtnnnnnnncacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatct 125  Q
    |||||| ||| |||||||||||||||       ||||||||||| |||||||||||||||||| ||| | || |||||||||||||||||||||    
T  26762604 atccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatct 26762511  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 25511570 - 25511479
Alignment:
Q  68 gattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacac 159  Q
    |||||||| ||| ||||||||||| || ||||| || |||||||||||||||| |||| || || |||| |||||||||||||  |||||||    
T  25511570 gattgatcttgttggagatgtcttcgactatcttctcaataaacttgtattcagatctattcatgtccaataaggtaagttagaacatacac 25511479  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 27604390 - 27604442
Alignment:
Q  191 tctaactattttgacatataaatatctaatacttgttttaaaaacataaataaa 244  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  27604390 tctaactattttgacatataaataactaatacttg-tttaaaaacgtaaataaa 27604442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 25539175 - 25539093
Alignment:
Q  68 gattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttag 150  Q
    |||||||  ||| ||||||||||| || ||||| || ||||||||||||||||||||| || || |||| |||| ||||||||    
T  25539175 gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagataagttag 25539093  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 26647114 - 26647012
Alignment:
Q  65 cacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacaccaata 164  Q
    ||||||||||| ||| ||||||||||| || ||||| |  ||||||||||||||||||||| || || |||   ||| ||||||||| ||| |||||| |    
T  26647114 cacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagataagttagtacatgcaccaaca 26647015  T
Q  165 tca 167  Q
    |||    
T  26647014 tca 26647012  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 26753082 - 26752980
Alignment:
Q  65 cacgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacaccaata 164  Q
    ||||||||||| ||| ||||||||||| || ||||| |  ||||||||||||||||||||| || || |||   ||| ||||||||| ||| |||||| |    
T  26753082 cacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagataagttagtacatgcaccaaca 26752983  T
Q  165 tca 167  Q
    |||    
T  26752982 tca 26752980  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 26802941 - 26802850
Alignment:
Q  191 tctaactattttgacatataaatatctaatacttgttttaaaaacataaataaataaaatattttctatttaagctttaagatgaggttattg 283  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||| || ||||  ||  ||||| | |||||| |||||||||||| ||||||    
T  26802941 tctaactatttcaacatataaataactaatacttg-tttaaaaacgtatataagaaaggtatttcccatttaacctttaagatgagattattg 26802850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 25580354 - 25580263
Alignment:
Q  68 gattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacac 159  Q
    |||||||  ||| ||||||||||| || ||||| || ||||||||||||||||||||| ||  | |||| |||| ||||||||  |||||||    
T  25580354 gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcgtgtccaataagataagttagaacatacac 25580263  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 26056554 - 26056463
Alignment:
Q  68 gattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacac 159  Q
    |||||||| ||| ||||||| ||| || ||||| || |||||||||| ||||| |||| || || |||| |||||||||||||  |||||||    
T  26056554 gattgatcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaataaggtaagttagaacatacac 26056463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 26076524 - 26076433
Alignment:
Q  68 gattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagtgcatacac 159  Q
    |||||||| ||| ||||||| ||| || ||||| || |||||||||| ||||| |||| || || |||| |||||||||||||  |||||||    
T  26076524 gattgatcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaataaggtaagttagaacatacac 26076433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 26143364 - 26143313
Alignment:
Q  191 tctaactattttgacatataaatatctaatacttgttttaaaaacataaata 242  Q
    ||||||| |||||||||||||||| || | ||||||||||||||||| ||||    
T  26143364 tctaacttttttgacatataaataacttacacttgttttaaaaacattaata 26143313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 27427300 - 27427350
Alignment:
Q  193 taactattttgacatataaatatctaatacttgttttaaaaacataaataaa 244  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||    
T  27427300 taactattttgacatataaataactaacaattg-tttaaaaacataaataaa 27427350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 27698134 - 27698193
Alignment:
Q  66 acgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatct 125  Q
    |||| ||||| ||| |||||||| ||||| |||||| | |||||||||||||||||||||    
T  27698134 acgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatct 27698193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 25483570 - 25483504
Alignment:
Q  176 aatacatcatacaactctaactattttgacatataaatatctaatacttgttttaaaaacataaata 242  Q
    |||| ||||| ||| ||||||| |||||||||||||||| || | ||||||||||||| ||| ||||    
T  25483570 aatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaaccattaata 25483504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 26143500 - 26143418
Alignment:
Q  68 gattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttag 150  Q
    |||||||  ||| ||||||||||| || ||||| || ||||||||||||||||||||| || || |||| |||| ||| ||||    
T  26143500 gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagataaattag 26143418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 26803080 - 26802995
Alignment:
Q  66 acgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagt 151  Q
    |||||||||| ||| |||||||| ||||| ||||||   ||| ||||||||||||||||| || || ||||  ||| |||||||||    
T  26803080 acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagt 26802995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 28792993 - 28792908
Alignment:
Q  66 acgattgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagt 151  Q
    |||| ||||| ||| |||||||| ||||| ||| ||   ||||||||||||||||||||| ||||| |||  |||| |||||||||    
T  28792993 acgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattaatgtccgataagataagttagt 28792908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 18655142 - 18655199
Alignment:
Q  176 aatacatcatacaactctaactattttgacatataaatatctaatacttgttttaaaa 233  Q
    |||| ||||||||  ||||||||||||||| |||||||| ||||||||||||| ||||    
T  18655142 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18655199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 18723750 - 18723807
Alignment:
Q  176 aatacatcatacaactctaactattttgacatataaatatctaatacttgttttaaaa 233  Q
    |||| ||||||||  ||||||||||||||| |||||||| ||||||||||||| ||||    
T  18723750 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 18731169 - 18731226
Alignment:
Q  176 aatacatcatacaactctaactattttgacatataaatatctaatacttgttttaaaa 233  Q
    |||| ||||||||  ||||||||||||||| |||||||| ||||||||||||| ||||    
T  18731169 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 18699070 - 18699122
Alignment:
Q  181 atcatacaactctaactattttgacatataaatatctaatacttgttttaaaa 233  Q
    ||||||||  ||||||||||||||| |||||||| ||||||||||||| ||||    
T  18699070 atcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18699122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 18074255 - 18074205
Alignment:
Q  193 taactattttgacatataaatatctaatacttgttttaaaaacataaataaa 244  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||    
T  18074255 taactattttgacatataaataactaacaattg-tttaaaaacataaataaa 18074205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 18679250 - 18679299
Alignment:
Q  194 aactattttgacatataaatatctaatacttgttttaaaaacataaataaa 244  Q
    |||||||||||| |||||||| |||||||||| ||||||||| ||||||||    
T  18679250 aactattttgacttataaataactaatacttg-tttaaaaacgtaaataaa 18679299  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 60063 - 60013
Alignment:
Q  193 taactattttgacatataaatatctaatacttgttttaaaaacataaataaa 244  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||    
T  60063 taactattttgacatataaataactaacaattg-tttaaaaacataaataaa 60013  T

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Target: scaffold0277 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 4265 - 4345
Alignment:
Q  71 tgatcctgtcggagatgtctttgattatctcctgaataaacttgtattcatatctgttaatctccattaaggtaagttagt 151  Q
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T  4265 tgatcttgttggagatgttcttgactatctctccaataaacttgtattcatatctattaatgtccgataagataagttagt 4345  T

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