View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_29 (Length: 281)
Name: NF15414_low_29
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 22122168 - 22122314
Alignment:
| Q |
1 |
caattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatat |
100 |
Q |
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| T |
22122168 |
caattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatat |
22122267 |
T |
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| Q |
101 |
ccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
147 |
Q |
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| T |
22122268 |
ccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
22122314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 40512305 - 40512159
Alignment:
| Q |
1 |
caattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512305 |
caattagattttaaacaagatcaacacaacattagtaataacaaattctcacaaacctgctttatatcttcatcataatcactgacattgaaattaatat |
40512206 |
T |
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| Q |
101 |
ccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
147 |
Q |
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| T |
40512205 |
ccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
40512159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 39644554 - 39644458
Alignment:
| Q |
51 |
acaaacctgctttatatcttcatcataatcactgacattgaaattaatatccgcatccacgccacgaaactttatcgcagctcgatcatatgctctg |
147 |
Q |
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| T |
39644554 |
acaaacctgattcatatcttcctcatactcaactagattgaaattaatgtcagcatcaagtcccctaaactttatagcagctcgatcataggctctg |
39644458 |
T |
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