View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_3 (Length: 666)
Name: NF15414_low_3
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 42240319 - 42239959
Alignment:
| Q |
10 |
tgagatgaagcagaggattgccaataacaacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggt |
109 |
Q |
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| T |
42240319 |
tgagatgaagcagaggattgccaataacaacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggt |
42240220 |
T |
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| Q |
110 |
gatccatttattgttgaagagaatccacatattcatgacccagatgatgtttttccaggtcttgttatcaagattaatcctttcaccaatcgatagaagt |
209 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42240219 |
gatccatttattgtagaagagaatccacatattcatgacccagatgatgtttttccaggtcttgttatcaagattaatcctttcaccaatcgatagaagt |
42240120 |
T |
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| Q |
210 |
c---------------ttgttgaaggttacagtacaagatgtatgaagatactcttttcacagaaagaatagcctcttcattatacttgtgttccttcaa |
294 |
Q |
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| T |
42240119 |
cttgtcttttggggtcttgttgaaggttaaagtaca--atgtatgaagatactcttttcacagaaagaatagcctcttaattatacttgtgttccttcaa |
42240022 |
T |
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| Q |
295 |
atcatgtaatcctagataaaacatgttctgtttttatgatttgtacatataatatttgcttca |
357 |
Q |
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| T |
42240021 |
atcatgtaatcctagataaaacatgttctgtttttatgatttgtacatataatatttgcttca |
42239959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 535 - 648
Target Start/End: Complemental strand, 42230793 - 42230680
Alignment:
| Q |
535 |
tgaagaaatgttaactcatgtacacgtgatattttggcattggttaaagaattaatttattttttgagtttaatttagttggtaagaatatataatgtat |
634 |
Q |
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| T |
42230793 |
tgaagaaatgttacctcatgtacacgtgatattttggcattggttaaagaattaatttattttatgagtttaatttagttgataagaatatataatgtat |
42230694 |
T |
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| Q |
635 |
aatatacataaggt |
648 |
Q |
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| T |
42230693 |
aatatacataaggt |
42230680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 402 - 475
Target Start/End: Complemental strand, 42230926 - 42230853
Alignment:
| Q |
402 |
ttaaatagataaataaccgagtaagaggaaatattcacggatgtacacagtacacccttagtccaaaataagtg |
475 |
Q |
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| T |
42230926 |
ttaaatagataaataaccgagtaagaggaaatattcacggatgtacacactacacccttagtccaaaataagtg |
42230853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 26303188 - 26303343
Alignment:
| Q |
38 |
aacaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccac |
137 |
Q |
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||||||| ||||||||||||||| || ||| | || |||||||| ||||| |||||||||||||| ||||||||||| | |||||||||||||||||||| |
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| T |
26303188 |
aacaaagtgtgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccac |
26303287 |
T |
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| Q |
138 |
atattcatgacccagatgatgtttttccaggtcttgttatcaagattaatcctttc |
193 |
Q |
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| T |
26303288 |
atattcatgatcctgatgatgttttccctggccttgttatcaaaattaaccctttc |
26303343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 45924377 - 45924517
Alignment:
| Q |
39 |
acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccaca |
138 |
Q |
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||||||| ||||||||||||||||| || | ||||| || || || | ||||| |||||||| |||||||| || |||||||| || ||||||||| |
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| T |
45924377 |
acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca |
45924476 |
T |
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| Q |
139 |
tattcatgacccagatgatgtttttccaggtcttgttatca |
179 |
Q |
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| T |
45924477 |
tatccatgatccagatgatgttttccctggtcttgttatca |
45924517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 45936325 - 45936465
Alignment:
| Q |
39 |
acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccaca |
138 |
Q |
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||||||| ||||||||||||||||| || | ||||| || || || | ||||| |||||||| |||||||| || |||||||| || ||||||||| |
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| T |
45936325 |
acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca |
45936424 |
T |
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| Q |
139 |
tattcatgacccagatgatgtttttccaggtcttgttatca |
179 |
Q |
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| T |
45936425 |
tatccatgatccagatgatgttttccctggtcttgttatca |
45936465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 12631392 - 12631266
Alignment:
| Q |
59 |
tatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccacatattcatgacccagatgatg |
158 |
Q |
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||||||||| ||||||| ||||| ||| | ||||| ||||| || ||| |||||| ||||||||||| | ||||| |||||||||||||| ||||||| |
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| T |
12631392 |
tatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatg |
12631293 |
T |
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| Q |
159 |
tttttccaggtcttgttatcaagatta |
185 |
Q |
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| || || ||||||||||||||||||| |
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| T |
12631292 |
tcttccctggtcttgttatcaagatta |
12631266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 12618576 - 12618450
Alignment:
| Q |
59 |
tatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgttgaagagaatccacatattcatgacccagatgatg |
158 |
Q |
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||||| ||| ||||||| ||||| ||| | ||||| ||||| || ||| |||||| ||||||||||| | ||||| ||||| |||||||| ||||||| |
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| T |
12618576 |
tatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatg |
12618477 |
T |
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| Q |
159 |
tttttccaggtcttgttatcaagatta |
185 |
Q |
| |
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| || || || ||||| ||||| |||| |
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| T |
12618476 |
tcttccctggccttgtcatcaaaatta |
12618450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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