View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_30 (Length: 278)
Name: NF15414_low_30
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 38336710 - 38336461
Alignment:
| Q |
13 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336710 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
38336611 |
T |
|
| Q |
113 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336610 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
38336511 |
T |
|
| Q |
213 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagag |
262 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336510 |
cttttaaaggatgtgaattccaatcctccatcctatttttcaggtaagag |
38336461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 29638337 - 29638586
Alignment:
| Q |
13 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638337 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
29638436 |
T |
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| Q |
113 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29638437 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacatgtaaatgctccc |
29638536 |
T |
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| Q |
213 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638537 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagag |
29638586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 20418343 - 20418592
Alignment:
| Q |
13 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418343 |
atactgcactgtagaattgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
20418442 |
T |
|
| Q |
113 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
212 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418443 |
ctaattttggaaattgaagaatacatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
20418542 |
T |
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| Q |
213 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagag |
262 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418543 |
cttataaaggatgtgaattccaatcctccatcctatttttcaggtaagag |
20418592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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