View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_31 (Length: 276)
Name: NF15414_low_31
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 6601217 - 6601462
Alignment:
| Q |
17 |
actttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctgcttggaa |
116 |
Q |
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| T |
6601217 |
actttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctccttggaa |
6601316 |
T |
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| Q |
117 |
agttttgatttctcttctgtgttgtgtcaagtggctgctttaccaaccgacttttttgttggatgctagaagcagctatattgacttgcacacataggaa |
216 |
Q |
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| T |
6601317 |
agttttgatttctcttctgtgttgtgtcaagtggctgctttaccaaccgacttttttgttggatgctagaagcagctatattgacttgcacacataggaa |
6601416 |
T |
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| Q |
217 |
tcttaataaagtgattagttattaatttttaaaaatgttttctagt |
262 |
Q |
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| T |
6601417 |
tcttaataaagtgattagttattaattttttaaaatgttttctagt |
6601462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 3702326 - 3702076
Alignment:
| Q |
17 |
actttcatatgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctgcttggaa |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
3702326 |
actttcatatgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaa |
3702227 |
T |
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| Q |
117 |
agttttgatttctcttctgtgttgtgtcaagtggctgctttaccaaccgacttttttgttggatgctagaagcagctatattgacttgcacacataggaa |
216 |
Q |
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| T |
3702226 |
agttttgatttctcttctgtgttgtgtctagtggctgctttaccaaccgacttttatgttggatgctagaagcagctatattgacttacacacataggaa |
3702127 |
T |
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| Q |
217 |
tcttaataaagtgattagttattaatttttaaaaatgttttctagtattat |
267 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
3702126 |
tcttagtaaagtgattagttattaattttttaaaatgttttcaagttttat |
3702076 |
T |
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