View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_33 (Length: 262)
Name: NF15414_low_33
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 22079653 - 22079453
Alignment:
| Q |
18 |
atgaaatgagcataaaagcaactgatcatccatttcggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatc |
117 |
Q |
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| T |
22079653 |
atgaaatgagtataaaagcaactgatcatccattttggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatc |
22079554 |
T |
|
| Q |
118 |
tttcaactttaaggactttgatgagatcaagaagggagcagtaaggccagatgtcctgataggtaaattggactactttttccttttcaatttctaagtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22079553 |
tttcaactttaaggactttgatgagatcaagaagggagcactaaggccagatgtcctaataggtaaattggactactttttccttttcaatttgtaagtc |
22079454 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
22079453 |
t |
22079453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 23699950 - 23699793
Alignment:
| Q |
18 |
atgaaatgagcataaaagcaactgatcatccatttcggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatc |
117 |
Q |
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|||| |||| ||| |||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||||| || | |||||| |
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| T |
23699950 |
atgatatgaccatcaaagtaactgatcatcaatttaggtaggtgtttaatggtggaacaagtgttgacaaa---------catgacatacctagaccatc |
23699860 |
T |
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| Q |
118 |
tttcaactttaaggactttgatgagatcaagaagggagcagtaaggccagatgtcctgataggtaaa |
184 |
Q |
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|||| || ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
23699859 |
attcagtttcaaggagtttgatgagatcaagaagggaatagtaaggccagatgtccttataggtaaa |
23699793 |
T |
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