View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15414_low_34 (Length: 259)

Name: NF15414_low_34
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15414_low_34
NF15414_low_34
[»] chr3 (2 HSPs)
chr3 (13-240)||(50805569-50805796)
chr3 (13-240)||(50870081-50870308)
[»] chr7 (1 HSPs)
chr7 (13-171)||(19056461-19056618)
[»] chr4 (1 HSPs)
chr4 (168-240)||(13675674-13675746)
[»] chr6 (1 HSPs)
chr6 (168-240)||(19964973-19965045)
[»] chr8 (2 HSPs)
chr8 (16-91)||(40704837-40704913)
chr8 (168-240)||(43021186-43021258)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 50805569 - 50805796
Alignment:
Q  13 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50805569 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacaata 50805668  T
Q  113 attnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgccagaa 212  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50805669 attaaaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgctagaa 50805768  T
Q  213 aattggtcccataatgaagttgcaggag 240  Q
    ||||||||||||||||||||||||||||    
T  50805769 aattggtcccataatgaagttgcaggag 50805796  T

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Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 50870308 - 50870081
Alignment:
Q  13 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50870308 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacaata 50870209  T
Q  113 attnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatgccagaa 212  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||    
T  50870208 attaaaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagcatttgtgctagcatttttatatggtttcttggtatacaaaaa 50870109  T
Q  213 aattggtcccataatgaagttgcaggag 240  Q
    |||| |||||||||||||||||||||||    
T  50870108 aattagtcccataatgaagttgcaggag 50870081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 19056618 - 19056461
Alignment:
Q  13 agaatatgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcactacaataaaatcgccagtaactaacagta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  19056618 agaatttgtaaaatgagtgtatacattctaataaaattccttttttccctcatctcatgcatcaaaatcaatacaataaaatcgccagtaactaacaata 19056519  T
Q  113 attnnnnnnnncaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagca 171  Q
    |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19056518 att-aaaaaaacaaacaacggaatcgaattgaatgtgaaagccaaaattacctcaagca 19056461  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 13675746 - 13675674
Alignment:
Q  168 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggag 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13675746 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattagtcccataatgaagttgcaggag 13675674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 19964973 - 19965045
Alignment:
Q  168 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggag 240  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  19964973 agcatttgtgctagcatttttatatggtttcttggtatcccaaaaaattggtcccataatgaagttgcaggag 19965045  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 40704913 - 40704837
Alignment:
Q  16 atatgtaaaatgagtgtatacattctaataaaattc-cttttttccctcatctcatgcatcaaaatcactacaataa 91  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| |||||||||| ||  |||||||||||||||    
T  40704913 atatgtaaaatgagtgtatatattctaataaaattcatttttttccttcatctcatgaatagaaatcactacaataa 40704837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 43021186 - 43021258
Alignment:
Q  168 agcatttgtgctagcatttttatatggtttcttggtatgccagaaaattggtcccataatgaagttgcaggag 240  Q
    ||||||| | |||||| |||||||||| |||||||||||||||| | |||||||||||| ||||| |||||||    
T  43021186 agcatttttactagcagttttatatggcttcttggtatgccagagatttggtcccataaagaagtcgcaggag 43021258  T

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