View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15414_low_4 (Length: 651)
Name: NF15414_low_4
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 11 - 635
Target Start/End: Original strand, 7498215 - 7498837
Alignment:
| Q |
11 |
cacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacattt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498215 |
cacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacattt |
7498314 |
T |
|
| Q |
111 |
gtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtttgaacaaaaattgcaggatccatcaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7498315 |
gtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtt--aacaaaaattgcaggatccatcaa |
7498412 |
T |
|
| Q |
211 |
ttggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498413 |
ttggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaa |
7498512 |
T |
|
| Q |
311 |
acaataaatgtatagttggttccattttgagccaaaattgttgagtgattttgacatgtttggatattctcgagtaaaattaaatttattttgttctaaa |
410 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498513 |
acaatcaatgtatagttggttccattttgaggcaaaattgttgagtgattttgacatgtttggatattctcgagtaaaattaaatttattttgttctaaa |
7498612 |
T |
|
| Q |
411 |
ctttcaatttcttttgaaggtgcctgaggatttgattgaggcaatcacaaacaagactgagacaccacctatagtgcatgcagtttcagaaaagaaacat |
510 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498613 |
ctttcaatttcttttgaaggtgccggaggatttgattgaggcaatcacaaacaagactgagacaccacctatagtgcatgcagtttcagaaaagaaacat |
7498712 |
T |
|
| Q |
511 |
agcactgtcttggaattggaggcttcatttcttaaatactttacaggcattgaatacaactccaagaatctgaaaacatacaacatctttgatagtgacc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7498713 |
agcactgtcttggaattggaggcttcatttcttaaatactttacaggcattgaatacaactccaagaatctgaaaacatacaacatctttgatagtgacc |
7498812 |
T |
|
| Q |
611 |
atgacttcgaaaattgttatggttg |
635 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7498813 |
atgacttcgaaaattgttatggttg |
7498837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 24338549 - 24338586
Alignment:
| Q |
356 |
tgattttgacatgtttggatattctcgagtaaaattaa |
393 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24338549 |
tgattttgacatgtttggatgttctcgagtaaaattaa |
24338586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 2171738 - 2171770
Alignment:
| Q |
359 |
ttttgacatgtttggatattctcgagtaaaatt |
391 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
2171738 |
ttttgacatgtttggatgttctcgagtaaaatt |
2171770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University