View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_48 (Length: 216)
Name: NF15414_low_48
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 30709497 - 30709325
Alignment:
| Q |
19 |
agaacagtccagcacctccttccattttccattggagaatgttatagatattgtggagca--atccgattgatactttgggaacgattcaacaga--gag |
114 |
Q |
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| T |
30709497 |
agaacagtccggaacctccttccattttccattggagaatgttatagatattgtggagcacaatccgattgatactttgggaacgattcaacacatagag |
30709398 |
T |
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| Q |
115 |
gaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtcta |
187 |
Q |
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| T |
30709397 |
gaaaatactcctattttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtcta |
30709325 |
T |
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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 13231548 - 13231702
Alignment:
| Q |
30 |
gcacctccttccattttccattggagaatgttatagatattgtgga--gcaatccgattgatactttgggaacgattcaacagagaggaaaatactccta |
127 |
Q |
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| T |
13231548 |
gcacctccttccattttcgattggagaatgtaatagatattgtggagcgcaatcagattgatactttgggaatggttcaac-----gcataatactcata |
13231642 |
T |
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| Q |
128 |
ttttagagctggttcagctgttgaatacattaggtgttgtgacatcttctagtgtgtcta |
187 |
Q |
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| T |
13231643 |
ttttagagccgattaagccgttgaagacatcagctgttgcgacatctattggtgtgtcta |
13231702 |
T |
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