View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15414_low_50 (Length: 210)
Name: NF15414_low_50
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 35843966 - 35843793
Alignment:
| Q |
16 |
atgaaaatggggagagcctatcaatggatattaagaattgtgaaaacatttggttgattttgtccttatatatgcattagagttgacattttacaataaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35843966 |
atgaaaatggggagagcctatcaatggatattaagaattgtgaaaacatttggttgattttgtccttatatatgcattagagttgacattttacaataaa |
35843867 |
T |
|
| Q |
116 |
ctataatgcatacgaatctttcaaagaattagaggtattttttattgtttcatggatgaggacacccaacctat |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35843866 |
ctataatgcatacgaatctttcaaagaattagaggtattttttattgtttcatggatgaggacacccaacctat |
35843793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University