View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_6 (Length: 613)
Name: NF15414_low_6
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Original strand, 22121575 - 22122177
Alignment:
| Q |
11 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121575 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
22121674 |
T |
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| Q |
111 |
cctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
210 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121675 |
cctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
22121774 |
T |
|
| Q |
211 |
aaaaacccagaccaatataattaagaactaaatactggtttatggttaaataaatcacaaatcaagcattttaggctcaactaataaatcaaattaaact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121775 |
aaaaacccagaccaatataattaagaactaaatactggtttatggttaaataaatcacaaatcaagcattttaggctcaactaataaatcaaattaaact |
22121874 |
T |
|
| Q |
311 |
aaaggattttcttacttctttccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttg |
410 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121875 |
aaaggattttcttacttcttcccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttg |
22121974 |
T |
|
| Q |
411 |
agaaaccagtactctgtctacgcagaatatgcacaaactcttcctttgtaaagttattcatctacacaacaataaaatcaaagtttatgctacaattaaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22121975 |
agaaaccagtactctgtctacgcagaatatgcacaaactcttcctttgtaaagttattcatctacacaacaataaaatcaaagtttatgctacaattaaa |
22122074 |
T |
|
| Q |
511 |
acttaacattcaaattttaaaatagatcatctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattag |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22122075 |
acttaacattcaaattttaaaatagatcatctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattag |
22122174 |
T |
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| Q |
611 |
att |
613 |
Q |
| |
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||| |
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| T |
22122175 |
att |
22122177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 40512898 - 40512296
Alignment:
| Q |
11 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512898 |
atcatcaatacagcaattaagtcaataacacaacatgtagaaaagaaaatataaaagtaaataatccaaaatatttaattaggcatttcatttgagatat |
40512799 |
T |
|
| Q |
111 |
cctgatatatatgattgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
210 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512798 |
cctgatatatatgatcgataaattaaaaccttgcagcatctagctcgctatcaaaaagcccaagatatatatacctacataaacccagaccaatataatt |
40512699 |
T |
|
| Q |
211 |
aaaaacccagaccaatataattaagaactaaatactggtttatggttaaataaatcacaaatcaagcattttaggctcaactaataaatcaaattaaact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512698 |
aaaaacccagaccaatataattaagaactaaatactggtttatggttaaataaatcacaaatcaagcattttaggctcaactaataaatcaaattaaact |
40512599 |
T |
|
| Q |
311 |
aaaggattttcttacttctttccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttg |
410 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512598 |
aaaggattttcttacttcttcccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttg |
40512499 |
T |
|
| Q |
411 |
agaaaccagtactctgtctacgcagaatatgcacaaactcttcctttgtaaagttattcatctacacaacaataaaatcaaagtttatgctacaattaaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512498 |
agaaaccagtactctgtctacgcagaatatgcacaaactcttcctttgtaaagttattcatctacacaacaataaaatcaaagtttatgctacaattaaa |
40512399 |
T |
|
| Q |
511 |
acttaacattcaaattttaaaatagatcatctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattag |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512398 |
acttaacattcaaattttaaaatagatcatctcaaaaattactcatctacacatcaataaaatcaaagttaaagctacaattatactaacttacaattag |
40512299 |
T |
|
| Q |
611 |
att |
613 |
Q |
| |
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||| |
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| T |
40512298 |
att |
40512296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 344 - 453
Target Start/End: Complemental strand, 19054064 - 19053955
Alignment:
| Q |
344 |
cccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttgagaaaccagtactctgtctacgcagaatatgca |
443 |
Q |
| |
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||||| ||||| ||||||| ||||||||| |||| ||| || ||||| |||||||||||||| |||| || |||||||| |||| || || | ||||| |
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| T |
19054064 |
cccatccgagcctcccatcttccacatttgtgcaaagtcacacctctatatttagaacttcctcttggaaatccagtactttgtcgccgtagtacatgca |
19053965 |
T |
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| Q |
444 |
caaactcttc |
453 |
Q |
| |
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|||| ||||| |
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| T |
19053964 |
caaattcttc |
19053955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 459
Target Start/End: Complemental strand, 6064782 - 6064667
Alignment:
| Q |
344 |
cccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttgagaaaccagtactctgtctacgcagaatatgca |
443 |
Q |
| |
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||||| ||||| ||||||| |||||||||||||| ||| || ||||| |||||||||||||| |||| || ||||| || ||||| || || | ||| | |
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| T |
6064782 |
cccattcgagcctcccatcttccacatttatgcaaagtcacacctctatatttagaacttcctcttggaaatccagtgctttgtctccgtagtacatgaa |
6064683 |
T |
|
| Q |
444 |
caaactcttcctttgt |
459 |
Q |
| |
|
|||| ||||||||||| |
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| T |
6064682 |
caaattcttcctttgt |
6064667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 418
Target Start/End: Original strand, 22616463 - 22616562
Alignment:
| Q |
319 |
ttcttacttctttccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttgagaaacca |
418 |
Q |
| |
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|||| |||| || ||||| || |||||||| ||||||||||| || |||||||| ||||| || ||||||||||| || ||||| || |||||||||||| |
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| T |
22616463 |
ttctcactttttgccaaggaattgtcccattcgagcttcccaacggccacatttgtgcagtgttactcctctgtacttcgaactccctcttgagaaacca |
22616562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 474
Target Start/End: Original strand, 39155026 - 39155177
Alignment:
| Q |
323 |
tacttctttccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttgagaaaccagtac |
422 |
Q |
| |
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||||| ||||| | ||| |||||||| | || ||||||| ||||||||| |||| ||||| ||||| |||||||| ||||| |||| |||||||| | |
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| T |
39155026 |
tacttttttcctaaaaattgtcccattcttgcctcccatcttccacatttgtgcaatgtaacacctctatatttagagcttcctcttggaaaaccagtgc |
39155125 |
T |
|
| Q |
423 |
tctgtctacgcagaatatgcacaaactcttcctttgtaaagttattcatcta |
474 |
Q |
| |
|
| |||| ||| || | ||| ||||||||||| ||||| || ||| ||||||| |
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|
| T |
39155126 |
tttgtcgacgaagtacatgtacaaactcttcttttgtcaaattagtcatcta |
39155177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 458
Target Start/End: Complemental strand, 39644901 - 39644784
Alignment:
| Q |
341 |
tgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttgagaaaccagtactctgtctacgcagaatat |
440 |
Q |
| |
|
|||||||| | ||||||||| || |||||||| || || || |||||||||||||| ||||| |||||||||||||| |||| || | ||| ||||| | |
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| T |
39644901 |
tgtcccattctagcttcccaacgaccacatttgtgaagtgttactcctctgtattttgaactcccccttgagaaaccgttactgtggcgacggagaatgt |
39644802 |
T |
|
| Q |
441 |
gcacaaactcttcctttg |
458 |
Q |
| |
|
|||| || || ||||||| |
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| T |
39644801 |
gcacgaattcctcctttg |
39644784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 41049852 - 41049756
Alignment:
| Q |
319 |
ttcttacttctttccaagaaactgtcccatacgagcttcccatcgtccacatttatgcagagtaactcctctgtatttagaacttccccttgagaaa |
415 |
Q |
| |
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|||| |||| || ||||| || || ||||| ||||||||||| || |||||||| ||||| || |||||||||| || ||||| || ||||||||| |
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| T |
41049852 |
ttctcactttttaccaaggaattgacccattcgagcttcccaacggccacatttgtgcagtgttcctcctctgtacttcgaactccctcttgagaaa |
41049756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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