View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_9 (Length: 523)
Name: NF15414_low_9
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 20 - 495
Target Start/End: Original strand, 3586696 - 3587171
Alignment:
| Q |
20 |
taatcctatttcgtcatcgttcccttggatcgctgtcgtgtacaaggagcaagtggtttgggttggttcggtgcattttgcttgattgtgttgttgtgct |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3586696 |
taatcctatttcgtcatcattcccttggatcgctgtcgtttacaaggagcaagtggtttgggttggttccgtgcattttgcttgattgtgttgttgtgct |
3586795 |
T |
|
| Q |
120 |
cttcatatatgctttcgataagctcatcactaggggtatatgtgtttgcttcagttgtcgatggtcttcaataattgacttccctttaaaactagttcag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
3586796 |
cttcatatatgctttcgataagctcatcactaggggtatatgtgtttgcttcagttgtcgatggtcctcaaaaattgacttccctttaaaactagttcag |
3586895 |
T |
|
| Q |
220 |
gtttgggcgttctcaaaccgttacggtatgatttgtattttatctaagtcattcgctacaatctctgggctaaaatggtcgtggaatgcttattgtttca |
319 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3586896 |
gtttgggtgttctcaaaccgttacggtatgatttgtattttatctaagtcgttcgctacaatctctgggctaaaatggtcgtggaatgcttattgtttca |
3586995 |
T |
|
| Q |
320 |
ttgatgtgcggtgggttataggtataaggttcaattaattcgtgttagcagtcttatccttagccttataaagaacctgtattcggttgccaagagttta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
3586996 |
ttgatgtgcggtgggttataggtataaggttcaattaattcgtgttagcagtcttatccttagccttataaagaacctgtattcggttgctaaaagttta |
3587095 |
T |
|
| Q |
420 |
aatacannnnnnnaattaagttcgtacgtgagctcgctgaattgtgcacgagtatatggatttttactctggatta |
495 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
3587096 |
aatacatttttttaattaagttcgtacgtgagctcgctgaattgtgcacgggtatgtggatttttactctggatta |
3587171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 9990381 - 9990138
Alignment:
| Q |
20 |
taatcctatttcgtcatcgttcccttggatcgctgtcgtgtacaaggagcaagtggtttgggttggttcggtgcattttgcttgattgtgttgttgtgct |
119 |
Q |
| |
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||||||||||||||| || |||| ||||||||| | | | |||||||| ||||| ||||| |||||||| || ||||||||||| ||| ||||||||||| |
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| T |
9990381 |
taatcctatttcgtcgtcattcctttggatcgccgccatttacaaggaacaagttgtttgtgttggttccgttcattttgcttggttgggttgttgtgct |
9990282 |
T |
|
| Q |
120 |
cttcatatatgctttcgataagctcatcactaggggtatatgtgtttgcttcagttgtcgatggtcttcaata-attgacttccctttaaaactagttca |
218 |
Q |
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||||| |||||||||||||||| || |||| ||||||||||||| |||| ||| ||||| ||||| ||| | ||||||||||||||||||||| ||| |
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| T |
9990281 |
cttcagatatgctttcgataaggtc-tcaccaggggtatatgtgcttgcgtcaattgtctgtggtccacaagacattgacttccctttaaaactaattcg |
9990183 |
T |
|
| Q |
219 |
ggtttgggcgttctcaaaccgttacggtatgatttgtattttatc |
263 |
Q |
| |
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||| || ||| ||||||| || |||||| ||||| ||||||| |
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| T |
9990182 |
tctttaggtgttatcaaacctttctggtatgttttgtgttttatc |
9990138 |
T |
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