View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_high_1 (Length: 836)
Name: NF15415_high_1
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 1 - 821
Target Start/End: Original strand, 35220564 - 35221400
Alignment:
| Q |
1 |
atggaaaatggggcacatcaactcatgaaaaacttcaactatagaccacttacattcaatatgtatagtttaaagtagattaattcttttatttagtaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
35220564 |
atggaaaatggggcacatcaactcatgaaaaacttcaactatagaccacttacattcaatatatgtagtttaaagtagattaattcttttatttagtaaa |
35220663 |
T |
|
| Q |
101 |
aaacagcagatcaattcttaa--------ttaattaattaattactgcagtggcagtttgtttcgagttttatcaagttaaaaattaatctaatttccct |
192 |
Q |
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| T |
35220664 |
aaacagcagatcaattcttaattaattaattaattaattaattactgcagtggcagtttgtttcgagttttatcaagttaaaaattaatctaatttccct |
35220763 |
T |
|
| Q |
193 |
atatatatacaacatgaatatgcaactagctgcagctacttcctctatttttgggggttatgattgaaaatgactagctaaatattgatgtattcactgt |
292 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35220764 |
atatatttacaacatgaatatgcaactagctgcagctacttcctctatttttgggggttatgattgaaaatgactagctaaatattgatgtattcactgt |
35220863 |
T |
|
| Q |
293 |
actgtgccatttgcagaaggcacattcaggttcactaatattttgta-----atgttatgaaaagttatgatacatgttatttattctaaatccgaaggg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35220864 |
actgtgccatttgcagaaggcacattcaggttcactaatattttgtaatgttatgttatgaaaagttatgatgcatgttatttattctaaatccgaaggg |
35220963 |
T |
|
| Q |
388 |
aagattccaattgtttgttgcaacttgcatttcatacatatgcttaatgatcctatatttccctctcaagttgccacgtactgttcatttccataactat |
487 |
Q |
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| T |
35220964 |
aagattccaattgtttgttgcaacttgcatttcatacatatgcttaatgatcctatatttccctctcaagttgccacgtactgttcatctccataactat |
35221063 |
T |
|
| Q |
488 |
ctctcaacttgcagggtggggttttgatgatcatttctgtataggtttatatgtttgtgtctttatcactcaacttgctaccttaggtcacctaatttga |
587 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35221064 |
ctctcaacttgcagggtggggttttgatgatcatttttgtattggtttatatgtttgtgtctttatcactcaacttgctaccttaggtcacctaatttga |
35221163 |
T |
|
| Q |
588 |
tttcatttcaccatcactttatatctttatcaatcaagtgaaataatctatatatgttgctaatttttcaaatattcttagcttaaacgttacaaca--a |
685 |
Q |
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| T |
35221164 |
tttcatttcaccatcactttatatctttatcaatcaagtgaaataatctatatatgttgctaatttttcaaatattcctagcttaaacgttacaacacca |
35221263 |
T |
|
| Q |
686 |
tgatat-ttagatacttttaatttttcaacattcatttaacgtctcattttttctatccattctcttgtcatattaccgacatgttacatctatcacatg |
784 |
Q |
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| T |
35221264 |
ttgcatcttagatacttttaatttttcaacattcatttaacgtctcattttttctatccattctcttgtcatattaccgacatgttacatctatcacatg |
35221363 |
T |
|
| Q |
785 |
atactttctacttctttcacttttagggtgtgtagtg |
821 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
35221364 |
atactttctacttctttctcttttagggtgtgtagtg |
35221400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 739
Target Start/End: Original strand, 40977206 - 40977265
Alignment:
| Q |
680 |
caacaatgatatttagatacttttaatttttcaacattcatttaacgtctcattttttct |
739 |
Q |
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||||||||||||||||| | | |||||||| ||||||||||||| ||||||||||||| |
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| T |
40977206 |
caacaatgatatttagacattcttaattttcatacattcatttaacatctcattttttct |
40977265 |
T |
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