View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_high_10 (Length: 540)
Name: NF15415_high_10
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 43544232 - 43544760
Alignment:
| Q |
1 |
tggtggtagaggagggagtggaggaagaggtggtggatttggaggtagacatggatcttctaaggatgatttgaacaacattacacttccaaagcaagat |
100 |
Q |
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| T |
43544232 |
tggtggtagaggagggagtggaggaagaggtggtggatttggaggtagacatggatcttctaaggatgatttgaacaacattacacttccaaagcaagat |
43544331 |
T |
|
| Q |
101 |
tttagaaatttggttccttttcagaaaaatttctatgttgaaagtcctatgatacaagccatgtctgatcagcaagtcatgcagtaccgtgctagtagag |
200 |
Q |
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| T |
43544332 |
tttagaaatttggttccttttcagaaaaatttctatgttgaaagtcctatgatacaagccatgtctgatcagcaagtcatgcagtaccgtgctagtagag |
43544431 |
T |
|
| Q |
201 |
atattacagttgaagggcatgatgtgccaaaaccaattcgcgcttttcatgaggcgaattttcctggtattttgtttgttcattcattatgctcctaatg |
300 |
Q |
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| T |
43544432 |
atattacagttgaagggcatgatgtgccaaaaccaattcgcgcttttcatgaggcgaattttcctggtattttgtttgttcattcattatgctcctaatg |
43544531 |
T |
|
| Q |
301 |
tatgtatttattcattgattattacttttcgtgtgtcgtttgtttgattatgtgttatattgtgctgttagattactgccttgacgttattgccaagttg |
400 |
Q |
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| T |
43544532 |
tttgtatttattcattgattattacctttcgtgtgtcgtttgtttgattatgtgttatattgtgctgttagattactgccttgacgttattgccaagttg |
43544631 |
T |
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| Q |
401 |
ggttttgttgagcctactccaattcaggctcagggttggcccatggctcttactggtagagatttaattggcattgctgagactggctcgggtaaaactt |
500 |
Q |
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| T |
43544632 |
ggttttgttgagcctactccaattcaggctcagggttggcccatggctcttacgggtagagatttaattggcattgctgagactggctcgggtaaaactt |
43544731 |
T |
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| Q |
501 |
tgtcgtatctacttcctgctatagttcat |
529 |
Q |
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| T |
43544732 |
tgtcgtatctacttcctgctatagttcat |
43544760 |
T |
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