View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15415_high_12 (Length: 406)
Name: NF15415_high_12
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 40 - 390
Target Start/End: Complemental strand, 413946 - 413596
Alignment:
| Q |
40 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttg |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
413946 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattcttattacttatttcatcaaactttttcg |
413847 |
T |
|
| Q |
140 |
aggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctgcatcaaaattattttgttcagccatttgatttgaaccattggacaatga |
239 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
413846 |
aggcttgaatttcccctgccaatgcctcctgctcaagagggtcactttctgtttcaaaattattttgttcagccatttgatttgaaccattggacaatga |
413747 |
T |
|
| Q |
240 |
catttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagcatcatgtcccaaatctggttccactgtgaga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
413746 |
catttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagcatcatgtcccaaatctggttccagtgtgaga |
413647 |
T |
|
| Q |
340 |
ggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaa |
390 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
413646 |
ggatgagaaactgctactaggtatcttgaacaggattgtacttgatcaaaa |
413596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 40
Target Start/End: Complemental strand, 413966 - 413937
Alignment:
| Q |
11 |
catcatcatcttcctcttccgccattgcag |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
413966 |
catcatcatcttcctcttccgccattgcag |
413937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 41 - 389
Target Start/End: Original strand, 37202906 - 37203245
Alignment:
| Q |
41 |
ccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttga |
140 |
Q |
| |
|
||||| |||||||||| || ||||| || ||||| |||||||| |||||||||||||||||| | || ||| ||| |||||| | | ||| |
|
|
| T |
37202906 |
ccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaatacacttccga---------tttgttgcttcctcaaacctatgtga |
37202996 |
T |
|
| Q |
141 |
ggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctgcatcaaaattattttgttcagccatttgatttgaaccattggacaatgac |
240 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
37202997 |
ggcttgaatttcccctgccaatggctcctgctcaagaggtacactttctgcttcaaatgtattttgttcagctatttgatttgaatgactggacaatgaa |
37203096 |
T |
|
| Q |
241 |
atttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagca---tcatgtcccaaatctggttccactgtga |
337 |
Q |
| |
|
|||||||||||||||| | || ||||||| |||| || |||| ||||||||||| |||| ||||||| |||| | |||| |||||||||||| ||| |
|
|
| T |
37203097 |
atttcagcctcacctaatacccccacctt---tggtgtacctactattgaattttcaacatcttcagcatcttcattttccaactctggttccactatga |
37203193 |
T |
|
| Q |
338 |
gaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaa |
389 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
37203194 |
caggatgaagaactgatactaggtatcttgatggggattctacttgatcaaa |
37203245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 37212247 - 37212350
Alignment:
| Q |
13 |
tcatcatcttcctcttccgccattgcagccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattct |
112 |
Q |
| |
|
|||||||||||| || ||||||| | | ||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
37212247 |
tcatcatcttccgctcccgccatggaaaccagttgagttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttcatatgattct |
37212346 |
T |
|
| Q |
113 |
catt |
116 |
Q |
| |
|
|||| |
|
|
| T |
37212347 |
catt |
37212350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 387
Target Start/End: Original strand, 37184054 - 37184235
Alignment:
| Q |
209 |
cagccatttgatttgaaccattggacaatgacatttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagc |
308 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||||||||||||| ||| ||| ||| | |||||| || | |||||||||| ||||||||||| |
|
|
| T |
37184054 |
cagccattttatttgaattatgggagaatgacatttcagcctcacctaattctcccatattctcaggtatacctcctgttgaattttcaacattttcagc |
37184153 |
T |
|
| Q |
309 |
atc---atgtcccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatca |
387 |
Q |
| |
|
|| ||| |||| |||||||||| ||||||||||| | |||| ||||||| ||||||| ||||| |||||||||| |
|
|
| T |
37184154 |
ctctttatgctccaactctggttccattgtgagaggataaacaacttgtactaggtatcttgacatggattctacttgatca |
37184235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 387
Target Start/End: Original strand, 37195186 - 37195367
Alignment:
| Q |
209 |
cagccatttgatttgaaccattggacaatgacatttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagc |
308 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||||||||||||| ||| ||| ||| | |||||| || | |||||||||| ||||||||||| |
|
|
| T |
37195186 |
cagccattttatttgaattatgggagaatgacatttcagcctcacctaattctcccatattctcaggtatacctcctgttgaattttcaacattttcagc |
37195285 |
T |
|
| Q |
309 |
atc---atgtcccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatca |
387 |
Q |
| |
|
|| ||| |||| |||||||||| ||||||||||| | |||| ||||||| ||||||| ||||| |||||||||| |
|
|
| T |
37195286 |
ctctttatgctccaactctggttccattgtgagaggataaacaacttgtactaggtatcttgacatggattctacttgatca |
37195367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 37183841 - 37183896
Alignment:
| Q |
47 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
102 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |
|
|
| T |
37183841 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37183896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 37194973 - 37195028
Alignment:
| Q |
47 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
102 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |
|
|
| T |
37194973 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37195028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University