View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15415_high_13 (Length: 405)

Name: NF15415_high_13
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15415_high_13
NF15415_high_13
[»] chr1 (8 HSPs)
chr1 (171-390)||(1674937-1675156)
chr1 (18-82)||(1674613-1674677)
chr1 (18-63)||(4395900-4395945)
chr1 (21-63)||(13254614-13254656)
chr1 (15-63)||(11237930-11237978)
chr1 (27-82)||(31622958-31623013)
chr1 (18-63)||(23699255-23699300)
chr1 (30-63)||(40519077-40519110)
[»] chr2 (11 HSPs)
chr2 (18-82)||(15507631-15507695)
chr2 (18-82)||(33024432-33024496)
chr2 (18-82)||(11084096-11084160)
chr2 (15-82)||(21252752-21252819)
chr2 (21-63)||(20171288-20171330)
chr2 (18-82)||(36243873-36243938)
chr2 (18-63)||(44898307-44898352)
chr2 (15-59)||(45273264-45273308)
chr2 (32-82)||(7486163-7486213)
chr2 (18-63)||(25714210-25714255)
chr2 (30-74)||(42872123-42872167)
[»] chr8 (8 HSPs)
chr8 (15-63)||(25400661-25400709)
chr8 (15-63)||(25496841-25496889)
chr8 (18-63)||(1358738-1358783)
chr8 (18-63)||(14896803-14896848)
chr8 (15-82)||(5870948-5871015)
chr8 (18-63)||(38457489-38457534)
chr8 (18-82)||(1256541-1256605)
chr8 (23-63)||(34039082-34039122)
[»] chr7 (4 HSPs)
chr7 (15-63)||(37124364-37124412)
chr7 (15-82)||(41689999-41690066)
chr7 (15-60)||(16196979-16197024)
chr7 (30-63)||(17269706-17269739)
[»] chr6 (4 HSPs)
chr6 (19-63)||(34259760-34259804)
chr6 (18-63)||(8461054-8461099)
chr6 (18-63)||(23410676-23410721)
chr6 (18-82)||(6110951-6111015)
[»] chr5 (8 HSPs)
chr5 (15-63)||(18413216-18413264)
chr5 (15-63)||(39615031-39615079)
chr5 (15-63)||(42673927-42673975)
chr5 (15-62)||(8544585-8544632)
chr5 (15-58)||(39585708-39585751)
chr5 (30-63)||(249385-249418)
chr5 (15-63)||(32474387-32474435)
chr5 (15-63)||(36437196-36437244)
[»] chr3 (9 HSPs)
chr3 (15-82)||(20841487-20841554)
chr3 (21-82)||(6472581-6472642)
chr3 (21-82)||(6749161-6749222)
chr3 (18-82)||(375917-375981)
chr3 (15-63)||(5493745-5493793)
chr3 (30-63)||(19229663-19229696)
chr3 (18-59)||(21915642-21915683)
chr3 (18-82)||(296629-296693)
chr3 (15-63)||(45759773-45759821)
[»] chr4 (5 HSPs)
chr4 (15-81)||(24073984-24074050)
chr4 (15-63)||(38044739-38044787)
chr4 (15-63)||(49263184-49263232)
chr4 (15-82)||(54982601-54982668)
chr4 (14-63)||(6949320-6949369)
[»] scaffold0841 (1 HSPs)
scaffold0841 (18-63)||(4534-4579)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 171 - 390
Target Start/End: Original strand, 1674937 - 1675156
Alignment:
Q  171 agggagtatgaaattagtttgaaatgttaattgggaataataagactaaagtatcattaataaattggtttgataaatcggtttaagggacatgagactt 270  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  1674937 agggagtatgaaattagtttgaaatgttaattggtaataagaagactaaagtatcattaataaatcggtttaataaatcggtttaagggacatgagactt 1675036  T
Q  271 agactccttaaacaagtagtcatatctccgatcaatcctttaagcgtgtgnnnnnnnnttgattgggaaaggagaatccatcatgattcccaatagtata 370  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  1675037 agactccttaaacaagtagtcatatctccggtcaatcccttaagcgtgtgaaaaaaaattgattgggaaaggagaatccatcatgattcccaatagtata 1675136  T
Q  371 gtcatatgatatggagtata 390  Q
    ||||||||||||||||||||    
T  1675137 gtcatatgatatggagtata 1675156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 1674613 - 1674677
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  1674613 ttctctcagatatgttcttttactttgcacttgaaatttttaacaagtattactcatcttattta 1674677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4395900 - 4395945
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  4395900 ttctctcagatatgttcttttactttgcacttgaaatttttaacaa 4395945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 13254614 - 13254656
Alignment:
Q  21 tctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  13254614 tctcaaatatgttcttttactttgcactttaaatttttaacaa 13254656  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 11237930 - 11237978
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||| |||| | |||||||||||||||||| |||||||||||||    
T  11237930 ttcttctctgagatctattcttttactttgcacttgaaatttttaacaa 11237978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 31622958 - 31623013
Alignment:
Q  27 atatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||||||||||| ||||| |||||||||||||| |  |||||| |||||||    
T  31622958 atatgttcttttactttacacttgaaatttttaacaagtaccactcatcttattta 31623013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 23699255 - 23699300
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||| || |||||||||||||||||||| || ||||||||||    
T  23699255 ttctctcaaatctgttcttttactttgcacttaaattttttaacaa 23699300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 40519077 - 40519110
Alignment:
Q  30 tgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||||||||||||||| |||||||||||||    
T  40519077 tgttcttttactttgcacttgaaatttttaacaa 40519110  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15507695 - 15507631
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||  ||||||||| |||||||    
T  15507695 ttctctcagatatgttcgtttactttgcacttgaaatttttaacaattattactcatcttattta 15507631  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 33024496 - 33024432
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |  | |||||||||| ||||    
T  33024496 ttctctcagatatgttcttttactttgcacttgaaatttttaacgattaatactcattttgttta 33024432  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 11084160 - 11084096
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||  | ||||||| |||||||    
T  11084160 ttctctcagatctgttcttttactttgcatttgaaatttttaacaattactactcatcttattta 11084096  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 21252819 - 21252752
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||||  |||||||||||||||||| |||| |||||||||||||   |||||||| |||||||    
T  21252819 ttcttctctcgaatatgttcttttactttgtacttgaaatttttaacaattgttactcatcttattta 21252752  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 20171288 - 20171330
Alignment:
Q  21 tctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  20171288 tctcagatatgttcttttactttgcacttgaaaattttaacaa 20171330  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 36243873 - 36243938
Alignment:
Q  18 ttctctcagatatgttctttt-actttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||||||||||| |||| ||||| ||||| |||||||||||||  ||||||||| |||||||    
T  36243873 ttctctcagatatgttttttttacttttcacttgaaatttttaacaattattactcatcttattta 36243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 44898352 - 44898307
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  44898352 ttctctcagatttgttcttttactttgcacttaaattttttaacaa 44898307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 45273264 - 45273308
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaattttta 59  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||    
T  45273264 ttcttgtctcaaatatgttcttttactttgcacttgaaattttta 45273308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 7486163 - 7486213
Alignment:
Q  32 ttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||||||||||||  ||||||||||||| |||| |||| |||||||    
T  7486163 ttcttttactttgcacttgcaatttttaacaagtattattcatcttattta 7486213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 25714210 - 25714255
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| |||||||| | ||||||||| |||||||||||||    
T  25714210 ttctctcagatctgttctttaattttgcacttgaaatttttaacaa 25714255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 42872123 - 42872167
Alignment:
Q  30 tgttcttttactttgcacttcaaatttttaacaagcattactcat 74  Q
    |||||||||||||| ||||| |||||||||||||  |||||||||    
T  42872123 tgttcttttactttacacttgaaatttttaacaattattactcat 42872167  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 25400709 - 25400661
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  25400709 ttcttctctcaaatttgttcttttactttgcacttaaaatttttaacaa 25400661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 25496889 - 25496841
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  25496889 ttcttctctcaaatttgttcttttactttgcacttaaaatttttaacaa 25496841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1358738 - 1358783
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||    
T  1358738 ttctctcagatttgttcttttactttgcacttgaattttttaacaa 1358783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 14896848 - 14896803
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||    
T  14896848 ttctctcagatctgttctttcactttgcacttgaaatttttaacaa 14896803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 5871015 - 5870948
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||| | || |||| ||||||||||||||| |||||||||||||   |||||||| |||||||    
T  5871015 ttcttctcttaaatctgtttttttactttgcacttgaaatttttaacaattgttactcatcttattta 5870948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 38457534 - 38457489
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||| || | |||||||||||||||||| |||||||||||||    
T  38457534 ttctctcaaatctattcttttactttgcacttgaaatttttaacaa 38457489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 1256541 - 1256605
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||| || ||||||||||||||||  || |||||||||||||    |||||||||||||||    
T  1256541 ttctctcaaatttgttcttttactttgctattgaaatttttaacaaatgatactcattttattta 1256605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 34039122 - 34039082
Alignment:
Q  23 tcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  34039122 tcagatctgttcttttattttgcacttgaaatttttaacaa 34039082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 37124412 - 37124364
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||    
T  37124412 ttcttctctcaaatttgttcttttactttgcacttgaaatttttaacaa 37124364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 41690066 - 41689999
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||| ||||| || |||||||||||||||||||| |||||||||| || | |||||||| |||||||    
T  41690066 ttcttttctcaaatttgttcttttactttgcacttgaaatttttaataatcgttactcatcttattta 41689999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 16197024 - 16196979
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaa 60  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||    
T  16197024 ttcttctctcaaatatgttcttttactttgcacttgaagtttttaa 16196979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 17269739 - 17269706
Alignment:
Q  30 tgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||||||||||||||| |||||||||||||    
T  17269739 tgttcttttactttgcacttgaaatttttaacaa 17269706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 34259804 - 34259760
Alignment:
Q  19 tctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||    
T  34259804 tctctcaaatatgttcttttactttgcacttgaaatttttaacaa 34259760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 8461099 - 8461054
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| |||| ||||||||||||||| || ||||||||||    
T  8461099 ttctctcagatctgttattttactttgcacttgaagtttttaacaa 8461054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 23410721 - 23410676
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||| || ||||||||||||||||| || |||||||||||||    
T  23410721 ttctctcacatttgttcttttactttgcatttgaaatttttaacaa 23410676  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6110951 - 6111015
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||| || | |||||||||||| ||||| |||||||||||||  | ||||||| |||||||    
T  6110951 ttctctcatatctattcttttactttacactttaaatttttaacaattactactcatcttattta 6111015  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 18413216 - 18413264
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  18413216 ttcttctctcaaatatgttcttttactttgcacttgaattttttaacaa 18413264  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 39615079 - 39615031
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||    
T  39615079 ttcttcactcaaatctgttcttttactttgcacttcaaatttttaacaa 39615031  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 42673927 - 42673975
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||    
T  42673927 ttcttctcttaaatatgttcttttactttgcacttgaaatttttaacaa 42673975  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 8544585 - 8544632
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaaca 62  Q
    ||||||||||| || |||||||||||||| ||||| ||||||||||||    
T  8544585 ttcttctctcaaatctgttcttttactttacacttgaaatttttaaca 8544632  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 39585708 - 39585751
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaattttt 58  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  39585708 ttcttctctcaaatatgttattttactttgcacttgaaattttt 39585751  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 249385 - 249418
Alignment:
Q  30 tgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||||||||||||||| |||||||||||||    
T  249385 tgttcttttactttgcacttgaaatttttaacaa 249418  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 32474435 - 32474387
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| || |||| ||||||||||||||| ||| |||||||||    
T  32474435 ttcttctctcaaatttgttgttttactttgcacttgaaacttttaacaa 32474387  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 36437196 - 36437244
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| |||| |||||||||||| ||||| | |||||||||||    
T  36437196 ttcttctctcaaatatattcttttacttttcacttgagatttttaacaa 36437244  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 20841554 - 20841487
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||| |||||| || |||||||||||||||||||| |||||||||||||   |||||||| |||||||    
T  20841554 ttctcctctcaaatctgttcttttactttgcacttgaaatttttaacaattgttactcatcttattta 20841487  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6472581 - 6472642
Alignment:
Q  21 tctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||| ||||||||||||| |||||| |||||||||||||  | ||||||| |||||||    
T  6472581 tctcagatctgttcttttacttagcacttgaaatttttaacaactactactcatcttattta 6472642  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 6749222 - 6749161
Alignment:
Q  21 tctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||| ||||||||||||| |||||| |||||||||||||  | ||||||| |||||||    
T  6749222 tctcagatttgttcttttacttagcacttgaaatttttaacaactactactcatcttattta 6749161  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 375981 - 375917
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||| || ||||||||||||| ||||||||| |||||||||||||  | | |||||||||||||    
T  375981 ttctcccaaatatgttcttttattttgcacttgaaatttttaacaattactgctcattttattta 375917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 5493793 - 5493745
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  5493793 ttcttctctcaaacatgttcttttactttgcacttgaattttttaacaa 5493745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 19229663 - 19229696
Alignment:
Q  30 tgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||||||||||||||| |||||||||||||    
T  19229663 tgttcttttactttgcacttgaaatttttaacaa 19229696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 21915683 - 21915642
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaattttta 59  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  21915683 ttctctcaaatttgttcttttactttgcacttgaaattttta 21915642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 296693 - 296629
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    |||||||| || |||| ||||| ||||||||| |||||||||||||  | ||||||| |||||||    
T  296693 ttctctcaaatctgtttttttattttgcacttgaaatttttaacaattactactcatcttattta 296629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 45759773 - 45759821
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||| || ||||||||||| ||||||||||| |||| ||||||||    
T  45759773 ttcttctcacaaatatgttctttcactttgcacttgaaatatttaacaa 45759821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 24073984 - 24074050
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattt 81  Q
    ||||||||||| || |||||||||||||||||||| | |||||||||||   |||||||| ||||||    
T  24073984 ttcttctctcaaatttgttcttttactttgcacttgagatttttaacaattgttactcatcttattt 24074050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 38044739 - 38044787
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  38044739 ttcttctctcaaatctgtttttttactttgcacttgaaatttttaacaa 38044787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 49263232 - 49263184
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    ||||||||||| || |||||||||||||| ||||| |||||||||||||    
T  49263232 ttcttctctcaaatttgttcttttactttacacttgaaatttttaacaa 49263184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 54982601 - 54982668
Alignment:
Q  15 ttcttctctcagatatgttcttttactttgcacttcaaatttttaacaagcattactcattttattta 82  Q
    ||||||||||| || |||| |||||||||||| || |||||||||||||   |||||||| |||||||    
T  54982601 ttcttctctcaaatctgtttttttactttgcaattgaaatttttaacaattgttactcatcttattta 54982668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 6949369 - 6949320
Alignment:
Q  14 cttcttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||| ||||||| || |||| ||||||||||||||| |||||||||||||    
T  6949369 cttcatctctcaaatctgttgttttactttgcacttgaaatttttaacaa 6949320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4534 - 4579
Alignment:
Q  18 ttctctcagatatgttcttttactttgcacttcaaatttttaacaa 63  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||    
T  4534 ttctctcagatatgttctttaattttgcacttgaaatttttaacaa 4579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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