View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_high_18 (Length: 379)
Name: NF15415_high_18
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 51270234 - 51269897
Alignment:
| Q |
18 |
tctccaatgtgtcagggtctatcactattgaccctttttgtgtctccgtcaaacaaaccaccctcccatcaccgagcttcacgacgcctgtgttggcatt |
117 |
Q |
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| T |
51270234 |
tctccaatgtgtcagggtctatcactattgaccctttttgtgtctccgtcaaacaaaccaccctcccatcaccgagcttcaccacgcctgtattggcatt |
51270135 |
T |
|
| Q |
118 |
gtcggtaagtgaggaaccggagaaaaggtttgctagctcccctacataggctaagaaattttcagccttagggacttcagaaaattcacgataacatatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51270134 |
gtcggtaagtgaggaaccggagaaaaggtttgctagctcccctacataggctaagaaattttcagccttagggacttcagaaaattcacgataacatatc |
51270035 |
T |
|
| Q |
218 |
ttctgatttttctttgctgcttgataagcttgagattcaacttgccgatggccggctactaaccgcccatcctcgaagtgaaggccgaccaaggtggcgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51270034 |
ttctgatttttctttgctgcttgataagcttgagattcaacttgccgatggccggctactaaccgcccatcctcgaagtgaaggccgaccaaggtggcgt |
51269935 |
T |
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| Q |
318 |
acccgtcaaagaggtgcctgaagttgtagtcccctatg |
355 |
Q |
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| T |
51269934 |
acccgtcaaagaggtgcctgaagttgtagtcccctatg |
51269897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 23308367 - 23308030
Alignment:
| Q |
18 |
tctccaatgtgtcagggtctatcactattgaccctttttgtgtctccgtcaaacaaaccaccctcccatcaccgagcttcacgacgcctgtgttggcatt |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
23308367 |
tctccaatgtgtcagggtctatcactatcgaccctttttgtgtctccgtcagacaaaccaccctcccatcgccgagcttcaccacgcctgtgtttgcatt |
23308268 |
T |
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| Q |
118 |
gtcggtaagtgaggaaccggagaaaaggtttgctagctcccctacataggctaagaaattttcagccttagggacttcagaaaattcacgataacatatc |
217 |
Q |
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|||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
23308267 |
gtcggtaagtgaggaaccagagaaaaggcttgcaagctcccctacataggctaagaaattttcagccttaggcacttcagaaaattcacggtaacatatc |
23308168 |
T |
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| Q |
218 |
ttctgatttttctttgctgcttgataagcttgagattcaacttgccgatggccggctactaaccgcccatcctcgaagtgaaggccgaccaaggtggcgt |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
23308167 |
ttctgatttttcattgctgcttgataagcttgagattcaacttgccgatggccggctattaaccgcccgtcctcaaagtgaagcccgaccaaggtggcgt |
23308068 |
T |
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| Q |
318 |
acccgtcaaagaggtgcctgaagttgtagtcccctatg |
355 |
Q |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
23308067 |
acccgtcaaagaggtgcctgaagttgtagtcacctatg |
23308030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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