View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_high_2 (Length: 746)
Name: NF15415_high_2
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 442
Target Start/End: Complemental strand, 5075342 - 5074909
Alignment:
| Q |
4 |
tatttgacctaaaatatataacaaccctcttattattatttttt--ctataaccaatcaaaccctttagaaaatggcaacgcaatacatgcagcaccaca |
101 |
Q |
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| T |
5075342 |
tatttgacctaaaatatataccaaccctcttattattattttttttctataaccaatcaaaccctttagaaaatggcaacgcaatacatgcagcaccaca |
5075243 |
T |
|
| Q |
102 |
aaataatatatggatgaaataaataagcaacgaataannnnnnnnatatgtatagattttggacgaagagatggtttatgtaagacattttaaaagactt |
201 |
Q |
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| T |
5075242 |
aaataatatatggatgaaataaataagcaacgaataattttttttatatgtatagattttggacgaagagatggtttatg-aagacattttaaaagactt |
5075144 |
T |
|
| Q |
202 |
tcaaactcaaaataaatttaaannnnnnnnnnnnnnnnnnatcaatatgctaatgtcatacaacgcaa---accaacaaatacgtcaatttcaatgaata |
298 |
Q |
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|||||||||||||||||||||| ||||||||| || ||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
5075143 |
tcaaactcaaaataaatttaaatgtttttttt--------atcaatatgtta-tgtcaaacaacgcaaccaacaaacaaatacgtcaatttcaatgaata |
5075053 |
T |
|
| Q |
299 |
caaacagaagcacggggataggacctgccacacgtgtacttaatcattatataaacgacttcatattttattatgtttccttctatctgttaaatgattg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5075052 |
caaacagaagcacggggataggacctgccacacgtgtacataatcattatataaacgacttcatattttattatgtttccttctatctgttaaatgattg |
5074953 |
T |
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| Q |
399 |
tactccttctactgttagtctattaatctagttcaactattaag |
442 |
Q |
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| T |
5074952 |
tactccttctactgttagtctattaatctagttcatctattaag |
5074909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 612 - 729
Target Start/End: Complemental strand, 5074638 - 5074521
Alignment:
| Q |
612 |
tgttcacttctttatccgattatgaaggtaatcaaatggacaagacctatgttcgatccatttgatagctcttcacttgatatttgaatcttagtttatc |
711 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
5074638 |
tgttcacttctttatccgattatgaaggtaatcaaatggacaaaacctatattcgatccatttaatagttcttcacttgatatttgaatcttagtttatc |
5074539 |
T |
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| Q |
712 |
atattgtaagagtttagt |
729 |
Q |
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|||||||||||||||||| |
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| T |
5074538 |
atattgtaagagtttagt |
5074521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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