View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15415_high_25 (Length: 299)

Name: NF15415_high_25
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15415_high_25
NF15415_high_25
[»] chr1 (15 HSPs)
chr1 (1-153)||(4858990-4859142)
chr1 (224-283)||(4858860-4858919)
chr1 (5-57)||(51067900-51067952)
chr1 (2-57)||(11410630-11410685)
chr1 (1-57)||(34083340-34083396)
chr1 (1-52)||(9398415-9398466)
chr1 (2-57)||(39949815-39949870)
chr1 (1-55)||(13135757-13135811)
chr1 (15-57)||(31998376-31998418)
chr1 (1-58)||(21015964-21016021)
chr1 (17-57)||(5468851-5468891)
chr1 (17-57)||(6094425-6094465)
chr1 (17-53)||(8426383-8426419)
chr1 (1-57)||(34766863-34766919)
chr1 (21-57)||(35690215-35690251)
[»] chr5 (8 HSPs)
chr5 (6-57)||(14574277-14574328)
chr5 (1-50)||(2705518-2705567)
chr5 (6-55)||(22297390-22297439)
chr5 (1-57)||(3671221-3671277)
chr5 (1-57)||(5107247-5107303)
chr5 (5-57)||(7112597-7112649)
chr5 (5-57)||(13864347-13864399)
chr5 (1-57)||(23118053-23118109)
[»] chr7 (9 HSPs)
chr7 (1-50)||(10954915-10954964)
chr7 (1-49)||(25025876-25025924)
chr7 (1-55)||(19793526-19793580)
chr7 (1-55)||(38553823-38553877)
chr7 (15-57)||(38779983-38780025)
chr7 (2-55)||(31723407-31723460)
chr7 (1-57)||(22690038-22690094)
chr7 (5-57)||(30296336-30296388)
chr7 (5-57)||(37230034-37230086)
[»] scaffold0426 (1 HSPs)
scaffold0426 (1-57)||(5842-5898)
[»] chr2 (12 HSPs)
chr2 (1-57)||(7640661-7640717)
chr2 (1-50)||(25274831-25274880)
chr2 (1-57)||(27152356-27152412)
chr2 (1-57)||(35727440-35727496)
chr2 (15-57)||(10991545-10991587)
chr2 (5-55)||(37670487-37670537)
chr2 (1-57)||(2256974-2257030)
chr2 (1-57)||(8761566-8761622)
chr2 (21-57)||(11846400-11846436)
chr2 (1-57)||(12599867-12599923)
chr2 (1-57)||(15654871-15654927)
chr2 (6-50)||(35372946-35372990)
[»] chr3 (14 HSPs)
chr3 (2-57)||(53633620-53633675)
chr3 (5-54)||(17035919-17035968)
chr3 (1-54)||(19939043-19939096)
chr3 (15-57)||(1707764-1707806)
chr3 (5-55)||(2186433-2186483)
chr3 (15-57)||(10843797-10843839)
chr3 (11-57)||(51250245-51250291)
chr3 (1-46)||(25902794-25902839)
chr3 (17-50)||(35208855-35208888)
chr3 (1-54)||(41151468-41151521)
chr3 (15-55)||(2105714-2105754)
chr3 (1-57)||(21914073-21914129)
chr3 (1-57)||(25505703-25505759)
chr3 (5-57)||(35863819-35863871)
[»] chr8 (6 HSPs)
chr8 (15-57)||(36919314-36919356)
chr8 (1-57)||(41625197-41625253)
chr8 (4-54)||(19701349-19701399)
chr8 (1-57)||(30623296-30623352)
chr8 (5-57)||(32421572-32421624)
chr8 (5-57)||(40795380-40795432)
[»] chr4 (9 HSPs)
chr4 (15-57)||(47704585-47704627)
chr4 (2-54)||(2228399-2228451)
chr4 (15-57)||(41329618-41329660)
chr4 (20-57)||(5534513-5534550)
chr4 (17-54)||(44195322-44195359)
chr4 (20-57)||(54151646-54151683)
chr4 (1-57)||(7371550-7371606)
chr4 (2-54)||(30380536-30380588)
chr4 (17-57)||(34968345-34968385)
[»] chr6 (5 HSPs)
chr6 (16-57)||(9311947-9311988)
chr6 (1-54)||(9665316-9665369)
chr6 (17-55)||(24438300-24438338)
chr6 (5-57)||(6503263-6503315)
chr6 (5-57)||(24248168-24248220)
[»] scaffold0591 (1 HSPs)
scaffold0591 (21-57)||(4040-4076)
[»] scaffold0262 (1 HSPs)
scaffold0262 (5-57)||(15936-15988)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 4859142 - 4858990
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagctagtggaaaaatagaagacatataatttaaatttggagacactg 100  Q
    ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |    
T  4859142 gttcgaaccccagaccttacatatattatgtattattcttatcaactgagttaagctcgtggaaaaatagaatacatataatttaaatttggagacaccg 4859043  T
Q  101 acatttatttttcttgttgaattgtaatatnnnnnnntcatgtattaggtgcc 153  Q
    |||||||||||||||||||||||||| |||       ||||||||||||||||    
T  4859042 acatttatttttcttgttgaattgtagtataaaaaactcatgtattaggtgcc 4858990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 4858919 - 4858860
Alignment:
Q  224 gaaggagcaaaatagtaattgactcctgctgtactcattgagtaataatggagtaatttt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4858919 gaaggagcaaaatagtaattgactcctgctgtactcattgagtaataatggagtaatttt 4858860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 51067900 - 51067952
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||  ||||| |||||||||| |||||||||||||||||||||||||||    
T  51067900 gaaccccgagccttgcatatattatgtattattcttaccaactgagttaagct 51067952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 11410685 - 11410630
Alignment:
Q  2 ttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||| |||||||||| |||| |||| ||| ||||||||||||||||||    
T  11410685 ttcgaaccccagaccttacatattttatgtattgttcataccaactgagttaagct 11410630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34083396 - 34083340
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||  |||||||||||||||  ||| ||||||||| ||||||||||||    
T  34083396 gttcgaaccccaaaccttacatatattatgcattgttcttaccatctgagttaagct 34083340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9398415 - 9398466
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagtt 52  Q
    ||||||||||||| |||||||||||| ||  ||| |||||||||||||||||    
T  9398415 gttcgaaccccagaccttacatatatcatgcattgttcttaccaactgagtt 9398466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 39949870 - 39949815
Alignment:
Q  2 ttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||| ||||  |||||||||  ||| ||||||||||||||||||||||    
T  39949870 ttcgaaccccagaccttgtatatattatgcattgttcttaccaactgagttaagct 39949815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13135757 - 13135811
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    ||||||||||||| | |||| ||||||||  ||||| ||||||||||||||||||    
T  13135757 gttcgaaccccagactttacttatattatggattatccttaccaactgagttaag 13135811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 31998418 - 31998376
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||| ||||||||||||||| |||||||||||||| |||||||    
T  31998418 ccttgcatatattatatattgttcttaccaactgatttaagct 31998376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21016021 - 21015964
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagcta 58  Q
    |||||||||||   |||||||||||||||  ||| ||||||||||||||| |||||||    
T  21016021 gttcgaaccccgaaccttacatatattatgcattgttcttaccaactgagctaagcta 21015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 5468891 - 5468851
Alignment:
Q  17 ttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||| ||||||| || |||||||||||||||    
T  5468891 ttacatatattatacattattcctatcaactgagttaagct 5468851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 6094465 - 6094425
Alignment:
Q  17 ttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||| ||||| | ||||||||||||||||||    
T  6094465 ttacatatattatacattatccataccaactgagttaagct 6094425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 8426419 - 8426383
Alignment:
Q  17 ttacatatattatatattattcttaccaactgagtta 53  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  8426419 ttacatatattatgtattgttcttaccaactgagtta 8426383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34766919 - 34766863
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| ||| ||||||| ||| | | ||||||||||||||||||    
T  34766919 gttcgaaccccagaccttgcatgtattatacattgtccataccaactgagttaagct 34766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 35690251 - 35690215
Alignment:
Q  21 atatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  35690251 atatattatgtattattcctaccaactgagttaagct 35690215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 14574277 - 14574328
Alignment:
Q  6 aaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  14574277 aaccccagaccttacatatattatatattgtacttaccaactgagttaagct 14574328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2705518 - 2705567
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgag 50  Q
    ||||||||| ||| ||||||||||||||| |||| |||||| ||||||||    
T  2705518 gttcgaacctcagaccttacatatattatgtattgttcttatcaactgag 2705567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 22297439 - 22297390
Alignment:
Q  6 aaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    |||||||| |||| |||||||||| |||| ||||||||||||||| ||||    
T  22297439 aaccccagaccttgcatatattatgtattgttcttaccaactgagctaag 22297390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3671277 - 3671221
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||  | |||| ||||||||||| ||||| |||| |||||||||||||||    
T  3671277 gttcgaaccctggaccttgcatatattatacattatccttatcaactgagttaagct 3671221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5107247 - 5107303
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| | | |||| ||||||||||  ||||||| ||||||||||||||||||    
T  5107247 gttcgaacctcggaccttgcatatattatgcattattcataccaactgagttaagct 5107303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 7112649 - 7112597
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||| ||| ||||||||||||||||| |||| | |||||| |||||||||||    
T  7112649 gaacctcagaccttacatatattatattttatccctaccaattgagttaagct 7112597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 13864399 - 13864347
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||| | |||| |||||||||| |||| ||| ||||||||||||||||||    
T  13864399 gaaccccggaccttgcatatattatgtattgttcataccaactgagttaagct 13864347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23118053 - 23118109
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||  |||||||||||||||  ||| | |||| |||||||||||||||    
T  23118053 gttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagct 23118109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10954915 - 10954964
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgag 50  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  10954915 gttcaaaccccagaccttacatatattatatattatttttaccaactgag 10954964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25025876 - 25025924
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactga 49  Q
    |||||||||| || |||| |||||||||||||||||||||| |||||||    
T  25025876 gttcgaaccctagaccttgcatatattatatattattcttatcaactga 25025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19793580 - 19793526
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    ||||||||||||| |||||||||||||||| ||| | ||| |||||||| |||||    
T  19793580 gttcgaaccccagaccttacatatattatacattgtcctttccaactgatttaag 19793526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38553877 - 38553823
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    ||||||||||||  |||||||||||||||  ||| ||||||||||||||| ||||    
T  38553877 gttcgaaccccaaaccttacatatattatgcattgttcttaccaactgagctaag 38553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 38780025 - 38779983
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||    
T  38780025 ccttacatatattatttattgttcctaccaactgagttaagct 38779983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 31723407 - 31723460
Alignment:
Q  2 ttcgaaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    |||||||| |||  ||| ||||||||||||||| |||||| |||||||||||||    
T  31723407 ttcgaacctcagatcttgcatatattatatattgttcttatcaactgagttaag 31723460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22690038 - 22690094
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||  |||| ||||||||||  |||||||||| |||||||| ||||||    
T  22690038 gttcgaaccccaaaccttgcatatattatgcattattcttagcaactgagctaagct 22690094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 30296388 - 30296336
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| |||| ||||||||||| ||| | ||||||||||||| ||||||    
T  30296388 gaaccccagaccttgcatatattatacattgtccttaccaactgagctaagct 30296336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 37230034 - 37230086
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| |||| ||||||||||  ||| | ||||||||||||||||||||    
T  37230034 gaaccccagaccttgcatatattatgcattttccttaccaactgagttaagct 37230086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5842 - 5898
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||||||||||||||| |||||||||  |||||||| ||||||    
T  5842 gttcgaaccccagaccttacatatattatacattattcttttcaactgagctaagct 5898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7640717 - 7640661
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| ||||||||||||||||||| |||| | |||||||| |||||||||||    
T  7640717 gttcgaacctcaggccttacatatattatgtattgtccttaccaattgagttaagct 7640661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 25274831 - 25274880
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgag 50  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||||    
T  25274831 gttcgaaccccagaccttacatatattatgcattgttcttaccaactgag 25274880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27152412 - 27152356
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| ||||||||||  ||||| | ||||||||||||||||||    
T  27152412 gttcgaaccccagaccttgcatatattatgcattatccctaccaactgagttaagct 27152356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35727496 - 35727440
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||  |||| ||||||||||  ||| ||||||||||||||||||||||    
T  35727496 gttcgaaccccaaaccttgcatatattatgcattgttcttaccaactgagttaagct 35727440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 10991587 - 10991545
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||||| |||| | ||||||||||||||||||||    
T  10991587 ccttacatatattatgtattgtccttaccaactgagttaagct 10991545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 37670487 - 37670537
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    ||||||||||| || ||||||||||| ||| ||||||||||||||| ||||    
T  37670487 gaaccccaggctttgcatatattatacattgttcttaccaactgagctaag 37670537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2257030 - 2256974
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| ||||||||||  ||| | | ||||||||||||||||||    
T  2257030 gttcgaaccccagaccttgcatatattatgcattgtccataccaactgagttaagct 2256974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8761566 - 8761622
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||| |||  ||||||||||||||| |||| | | ||||||||||||||||||    
T  8761566 gttcgaactccaacccttacatatattatgtattgtccataccaactgagttaagct 8761622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 11846436 - 11846400
Alignment:
Q  21 atatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  11846436 atatattatgtattattcctaccaactgagttaagct 11846400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12599867 - 12599923
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| |||||||||| |||| | | ||| ||||||||||||||    
T  12599867 gttcgaaccccagaccttgcatatattatgtattgtccatactaactgagttaagct 12599923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15654871 - 15654927
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| ||||| ||||  ||||| ||||||||||||| ||||||    
T  15654871 gttcgaaccccagaccttgcatattttatgcattatccttaccaactgagctaagct 15654927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 35372946 - 35372990
Alignment:
Q  6 aaccccaggccttacatatattatatattattcttaccaactgag 50  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||    
T  35372946 aaccccagaccttgcatatattatatattgtccttaccaactgag 35372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 53633620 - 53633675
Alignment:
Q  2 ttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||| | |||||||||||||||  ||||| ||||||||||||||||||||    
T  53633620 ttcgaaccccggaccttacatatattatgcattatccttaccaactgagttaagct 53633675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 17035919 - 17035968
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    ||||| |||||||||||||||||||| ||||| |||||||||| ||||||    
T  17035919 gaacctcaggccttacatatattatacattatccttaccaactaagttaa 17035968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19939043 - 19939096
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    ||||||||||||| |||| ||||||||||  ||| |||||||||||||||||||    
T  19939043 gttcgaaccccagacctttcatatattatgcattgttcttaccaactgagttaa 19939096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 1707764 - 1707806
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||    
T  1707764 ccttacatattttatacattattcataccaactgagttaagct 1707806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 2186433 - 2186483
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaag 55  Q
    ||||||||| ||||||||||||||| |||| | | ||||||||||||||||    
T  2186433 gaaccccagaccttacatatattatgtattgtccataccaactgagttaag 2186483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 10843797 - 10843839
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||| |||||||||| |||||||| ||||||||||||||||||    
T  10843797 ccttgcatatattatgtattattcataccaactgagttaagct 10843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 51250245 - 51250291
Alignment:
Q  11 caggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||| ||||||||||| ||| | ||||||||||||||||||||    
T  51250245 caggccttgcatatattatacattgtccttaccaactgagttaagct 51250291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25902839 - 25902794
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaac 46  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  25902839 gttcgaaccccagaccttgcatatattatacattatccttaccaac 25902794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 35208855 - 35208888
Alignment:
Q  17 ttacatatattatatattattcttaccaactgag 50  Q
    |||||||||||||| |||||||||||||||||||    
T  35208855 ttacatatattatacattattcttaccaactgag 35208888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41151521 - 41151468
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    |||||||||||||   | ||||||||||| ||||||| ||||||||||||||||    
T  41151521 gttcgaaccccagatttaacatatattatgtattatttttaccaactgagttaa 41151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 2105714 - 2105754
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaag 55  Q
    |||| ||||||||||| |||||| |||||||||||||||||    
T  2105714 ccttgcatatattatacattatttttaccaactgagttaag 2105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21914073 - 21914129
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||  |||| ||||||||||  ||| | ||||||||||||||||||||    
T  21914073 gttcgaaccccataccttgcatatattatgcattgtccttaccaactgagttaagct 21914129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25505703 - 25505759
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| ||||||||||  ||| | ||||| ||||||||||||||    
T  25505703 gttcgaaccccagaccttgcatatattatgcattgtccttacaaactgagttaagct 25505759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 35863819 - 35863871
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| |||| |||||||||| |||| | ||||||||||||| ||||||    
T  35863819 gaaccccagaccttgcatatattatgtattgtccttaccaactgagctaagct 35863871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 36919356 - 36919314
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  36919356 ccttacatatattatacattgttcttaccaactgagttaagct 36919314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41625253 - 41625197
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||| || |||||||||||||||  ||||||| ||||||||||| ||||||    
T  41625253 gttcgaaccctagaccttacatatattatgcattattcataccaactgagctaagct 41625197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 19701349 - 19701399
Alignment:
Q  4 cgaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    |||||||||| |||||||||||||||  ||||| |||| ||||||||||||    
T  19701349 cgaaccccagaccttacatatattatgcattatccttatcaactgagttaa 19701399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30623352 - 30623296
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||| |||| ||||||||||  ||| | ||||||||||||| ||||||    
T  30623352 gttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagct 30623296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 32421624 - 32421572
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||| | |||| ||||||||||||||| | | ||||||||||||||||||    
T  32421624 gaaccccggaccttgcatatattatatattgtccataccaactgagttaagct 32421572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 40795432 - 40795380
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||| | |||| |||||||||| |||| ||| ||||||||||||||||||    
T  40795432 gaaccccggaccttgcatatattatgtattgttcataccaactgagttaagct 40795380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 47704627 - 47704585
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  47704627 ccttacatatattatacattattcataccaactgagttaagct 47704585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 2228399 - 2228451
Alignment:
Q  2 ttcgaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    |||||| ||||| |||||||||||||||  ||||||||||| |||||||||||    
T  2228399 ttcgaatcccagaccttacatatattatgcattattcttactaactgagttaa 2228451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 41329660 - 41329618
Alignment:
Q  15 ccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||    
T  41329660 ccttacatatactatacattattcgtaccaactgagttaagct 41329618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 5534550 - 5534513
Alignment:
Q  20 catatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||||||| || |||||||||||||||||||    
T  5534550 catatattatatattgttattaccaactgagttaagct 5534513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 44195322 - 44195359
Alignment:
Q  17 ttacatatattatatattattcttaccaactgagttaa 54  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  44195322 ttacatatattatgtattattcctaccaactgagttaa 44195359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 54151646 - 54151683
Alignment:
Q  20 catatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  54151646 catatattatacattatccttaccaactgagttaagct 54151683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7371550 - 7371606
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||||| | |||| |||||||||| |||| | |||| |||||||||||||||    
T  7371550 gttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagct 7371606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 30380588 - 30380536
Alignment:
Q  2 ttcgaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    |||||||||||  |||| ||||||||||| ||| | |||||||||||||||||    
T  30380588 ttcgaaccccaaaccttgcatatattatacattgtccttaccaactgagttaa 30380536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34968385 - 34968345
Alignment:
Q  17 ttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||  |||||| |||||||||||||||||||    
T  34968385 ttacatatattatgcattatttttaccaactgagttaagct 34968345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 9311947 - 9311988
Alignment:
Q  16 cttacatatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  9311947 cttacatatattatgtattattcataccaactgagttaagct 9311988  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9665369 - 9665316
Alignment:
Q  1 gttcgaaccccaggccttacatatattatatattattcttaccaactgagttaa 54  Q
    ||||||||||| | |||||||||||||||||||| ||| |||||| ||||||||    
T  9665369 gttcgaaccccggaccttacatatattatatattgttcataccaattgagttaa 9665316  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 24438300 - 24438338
Alignment:
Q  17 ttacatatattatatattattcttaccaactgagttaag 55  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  24438300 ttacatatattatgcattattcttaccaactgagttaag 24438338  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 6503315 - 6503263
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||  |||||||||||||||| ||||| |||| ||| |||||||||||    
T  6503315 gaaccccaaaccttacatatattatacattatccttaacaattgagttaagct 6503263  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 24248220 - 24248168
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||| | ||||||||||||||| |||||| ||||||||||| | ||||||    
T  24248220 gaaccccggaccttacatatattatgtattatccttaccaactgtgctaagct 24248168  T

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Target: scaffold0591 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 4076 - 4040
Alignment:
Q  21 atatattatatattattcttaccaactgagttaagct 57  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  4076 atatattatatattgttcataccaactgagttaagct 4040  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 15936 - 15988
Alignment:
Q  5 gaaccccaggccttacatatattatatattattcttaccaactgagttaagct 57  Q
    ||||||||| |||| ||||||||||| ||| | |||||||| |||||||||||    
T  15936 gaaccccagaccttgcatatattatacattgtccttaccaattgagttaagct 15988  T

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