View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_high_27 (Length: 272)
Name: NF15415_high_27
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 4460564 - 4460429
Alignment:
| Q |
129 |
ggtttttcctatggatacaaacatccataatttttatccatggctaaagcgttgcctaaaatgtcnnnnnnngactgtttatgtggccagaaatattcct |
228 |
Q |
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| T |
4460564 |
ggtttttcctatggatagaaacatccataatttttatccatggctaaagcgttgcctaaaatgtcaaaaaaagattgtttgtgtggccagaaatattcct |
4460465 |
T |
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| Q |
229 |
aa-ttttaaccgcgtaagtgttgcctatagtataat |
263 |
Q |
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| T |
4460464 |
aatttttaaccgcgtaagtgttgccaatagtgtaat |
4460429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 4460708 - 4460597
Alignment:
| Q |
17 |
aatatatgaactgcgttaacaatgtaataaagaaatgaacggtgttaggtgtnnnnnnnncaatgttaattaacggtttaaggcgacattttatatcttt |
116 |
Q |
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| T |
4460708 |
aatatatgaactgcgttaacaatataataaagaaatgaacggtgttaggtgtaaaaaaaacaatgttaattaacggtttaaagcgacattttatatcttt |
4460609 |
T |
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| Q |
117 |
aggacacaatta |
128 |
Q |
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| T |
4460608 |
agggcaaaatta |
4460597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 4468956 - 4468907
Alignment:
| Q |
79 |
atgttaattaacggtttaaggcgacattttatatctttaggacacaatta |
128 |
Q |
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| T |
4468956 |
atgttaattaacagtttaaggcgccgttttatatctttaggccacaatta |
4468907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 4468323 - 4468258
Alignment:
| Q |
169 |
tggctaaagcgttgcctaaaatgtcnnnnnnngactgtttatgtggccagaaatattcctaatttt |
234 |
Q |
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| T |
4468323 |
tggctaaagggttgcctaaaatgtcaaaaaacgaatgtttgtgtggccataaatattcctaatttt |
4468258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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