View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_high_29 (Length: 267)
Name: NF15415_high_29
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 3866184 - 3866301
Alignment:
| Q |
11 |
cacagaaaaaacaaagcaatagataaattagaaaaactaaacaaactatttaaactcccttgatttaacaaatatgcatataaagaaaaacacgaaggag |
110 |
Q |
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| T |
3866184 |
cacagaaaaatcaaatcaatagataaattagaaaaactaaacaaactatttaaactcccttgatttaacaaatatgcatataaagaaaaacacgaaggag |
3866283 |
T |
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| Q |
111 |
tttagatgaacagtacct |
128 |
Q |
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| T |
3866284 |
tttagatgaacagtacct |
3866301 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 3866386 - 3866425
Alignment:
| Q |
213 |
tacacaaaggtcatttatatgcataaacatgtatgcttct |
252 |
Q |
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| T |
3866386 |
tacacaaaggtcatttatatgcataaacatgtatgcttct |
3866425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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