View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15415_high_3 (Length: 705)
Name: NF15415_high_3
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_high_3 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 658; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 12 - 705
Target Start/End: Complemental strand, 414636 - 413943
Alignment:
| Q |
12 |
atcatcaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
111 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414636 |
atcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactt |
414537 |
T |
|
| Q |
112 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatcagttgcttcttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414536 |
tagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatcagttgcttcttt |
414437 |
T |
|
| Q |
212 |
caattcaagaaatattactttaaccttctctgtcagttcctccttccttgcttcccatttgttcaaatctctttcagcagcttcagtcaccaacctaacg |
311 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
414436 |
caattcatgaaatatttctttaaccttctctgtcagttcctccttccttgcttcccatttgttcaaatctctttcagcagcttcagtcaccatcctaacg |
414337 |
T |
|
| Q |
312 |
ctgtctgtatcctgtatcaggttgcaagtctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttct |
411 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414336 |
ctgtctgtttcctgtatcagcttgcaagtctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttct |
414237 |
T |
|
| Q |
412 |
ggttttttatataactcacgacgtcaatcttcttttccaggtttttgcttgagatgttagcaatactagcattctttttgtccaactctgctatgatttc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414236 |
ggttttttatataactcacgacgtcaatcttcttttccaggtttttgcttgagatgttagcaatactagcattctttttgtccaactctgctatgatttc |
414137 |
T |
|
| Q |
512 |
acagattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggc |
611 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414136 |
acaaattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggc |
414037 |
T |
|
| Q |
612 |
atatgttccgactttatttgatattctttaatattgtccttaggccgggtttgtatttcggaatcaagctcatcatcatcttcctcttccgcca |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414036 |
atatgttccgactttatttgatattctttaatattgtccttaggccggctttgtatttcggaatcaagctcatcatcatcttcctcttccgcca |
413943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 549 - 604
Target Start/End: Original strand, 7527762 - 7527817
Alignment:
| Q |
549 |
aactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaa |
604 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
7527762 |
aactttgaagtgcaattcttcgcaatatctccatgcttgccgataacttttcttaa |
7527817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 7527576 - 7527612
Alignment:
| Q |
358 |
ttgcctcaagtatctcagttagcctgctgtgaagcca |
394 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
7527576 |
ttgcctcaagtatgtcagttagcctactgtgaagcca |
7527612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 37211616 - 37211772
Alignment:
| Q |
44 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
143 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||| ||||||| ||| |||||||| | |
|
|
| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
|
| Q |
144 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
200 |
Q |
| |
|
||||||||||||| ||| |||| |||||| ||||| |||||||| || |||||| |
|
|
| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatca |
37211772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 37217299 - 37217454
Alignment:
| Q |
45 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
144 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| || ||| |
|
|
| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
|
| Q |
145 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||| | ||| |||||||| || |||||| |
|
|
| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatca |
37217454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 344 - 688
Target Start/End: Original strand, 37211916 - 37212254
Alignment:
| Q |
344 |
cttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagccattcaacatccacgttctggttttttatataactcacgacgtcaatcttc |
443 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||| | |||||||| | | | ||| | | ||||| |
|
|
| T |
37211916 |
cttaagaatctgccttgcctcaagtatctcagttagcctggtgtgaagccactcaacttccactttcagattttttatgtcattaacgtcaccgatctta |
37212015 |
T |
|
| Q |
444 |
ttttccaggtttttgcttgagatgttagcaatactagcattctttttgtccaactctgctatgatttcacagattgcctccaagaacaatgaacggaact |
543 |
Q |
| |
|
||| ||||| || | | |||||||||||| || |||||||||||| |||| ||| ||||||||||| | |||||||| |||||| || | |
|
|
| T |
37212016 |
attttcaggtcatttcctttgatgttagcaat------atcctttttgtccaaatctgatattatttcacagatcgtatccaagaaagctgaacgaaatt |
37212109 |
T |
|
| Q |
544 |
tcacaaactttgtcgtgcagttcttcacaatatctccatgcttgccgatgatttttcttaataccggcatatgttccgactttatttgatattctttaat |
643 |
Q |
| |
|
|||| |||||||| || ||||| |||||||||||| |||||||| ||||||||||||| || |||| ||| | ||| | ||||||| |||| |
|
|
| T |
37212110 |
tcaccgactttgtcacacaattcttggtaatatctccatgtttgccgataatttttcttaatatcgacataaattctggcttcacttgatatatattaac |
37212209 |
T |
|
| Q |
644 |
attgtccttaggccgggtttgtatttcggaatcaagctcatcatc |
688 |
Q |
| |
|
|||||| |||| || |||| ||||| ||||||| ||||||||| |
|
|
| T |
37212210 |
catgtcctcaggctggctttgcatttcagaatcaacctcatcatc |
37212254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 614
Target Start/End: Original strand, 37183604 - 37183737
Alignment:
| Q |
481 |
cattctttttgtccaactctgctatgatttcacagattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
580 |
Q |
| |
|
||||||||| |||||| |||| ||| ||| ||||||| |||||| |||| |||||||| || ||| |||||| | ||| ||||| |||||||||| |
|
|
| T |
37183604 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
37183703 |
T |
|
| Q |
581 |
atgcttgccgatgatttttcttaataccggcata |
614 |
Q |
| |
|
|||||| ||||| ||||||||||| | ||||||| |
|
|
| T |
37183704 |
atgcttaccgataatttttcttaacatcggcata |
37183737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 614
Target Start/End: Original strand, 37194736 - 37194869
Alignment:
| Q |
481 |
cattctttttgtccaactctgctatgatttcacagattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
580 |
Q |
| |
|
||||||||| |||||| |||| ||| ||| ||||||| |||||| |||| |||||||| || ||| |||||| | ||| ||||| |||||||||| |
|
|
| T |
37194736 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
37194835 |
T |
|
| Q |
581 |
atgcttgccgatgatttttcttaataccggcata |
614 |
Q |
| |
|
|||||| ||||| ||||||||||| | ||||||| |
|
|
| T |
37194836 |
atgcttaccgataatttttcttaacatcggcata |
37194869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 37217573 - 37217627
Alignment:
| Q |
340 |
tctgcttaagaattcgccttgcctcaagtatctcagttagcctgctgtgaagcca |
394 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
37217573 |
tctgcttaagaatctgccttgcctcaagtattccagttagcctggtttgaagcca |
37217627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University