View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15415_high_7 (Length: 589)

Name: NF15415_high_7
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15415_high_7
NF15415_high_7
[»] chr3 (10 HSPs)
chr3 (15-571)||(22807483-22808042)
chr3 (47-348)||(22819206-22819507)
chr3 (168-234)||(26778468-26778534)
chr3 (357-440)||(26778739-26778823)
chr3 (357-440)||(26780764-26780848)
chr3 (168-234)||(26776178-26776244)
chr3 (168-234)||(26780484-26780550)
chr3 (364-440)||(26777937-26778014)
chr3 (268-348)||(26778646-26778726)
chr3 (268-348)||(26780671-26780751)
[»] chr8 (3 HSPs)
chr8 (47-348)||(5618392-5618693)
chr8 (44-234)||(32009621-32009816)
chr8 (246-426)||(32009354-32009535)
[»] chr7 (3 HSPs)
chr7 (41-234)||(6668147-6668343)
chr7 (240-348)||(6667957-6668065)
chr7 (135-187)||(25270916-25270968)
[»] chr5 (3 HSPs)
chr5 (109-224)||(17081589-17081704)
chr5 (379-441)||(17081280-17081342)
chr5 (243-348)||(17081383-17081488)
[»] chr2 (2 HSPs)
chr2 (100-232)||(28969375-28969506)
chr2 (97-183)||(29024291-29024377)


Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 15 - 571
Target Start/End: Complemental strand, 22808042 - 22807483
Alignment:
Q  15 catagggagagaatttttctcataggactgaaaattaacctcaccatgttatatgttggtggaatactattagcaatatgtccaacaacatcagcttttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  22808042 catagggagagaatttttctcataggactgaaaattaacctcaccatgttatatgttggtggaatactattagaaacatgtccaacaacatcagcttttt 22807943  T
Q  115 caacaacaaatttcataggtggatcaaatttaggataactaatcattcgaccaaccatatccttaagattaattctaaatcaacccaaacccataaaggt 214  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22807942 caacaacaaatttcataggaggatcaaatttaggataactaatcattcgatcaaccatatccttaagattaattctaaatcaacccaaactcataaaggt 22807843  T
Q  215 catcgtgacccaagcacctatacatttggaattcattgttgtttagatcgacaaatgttgcttaacgattgatttgatcaccaaaatctccggcaaacat 314  Q
    || ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  22807842 caacgtgacccaagcacctatacacttggaattcattgttgtttggatcgaccaatgttgcttaacgatcgatttgatcaccaaaatctccggcaaacat 22807743  T
Q  315 atttggtagcactacggcaccctaaacacaaacannnnnnnngtcaaaaatgattttgaaaggaatatacaaatatatgcatcattatggatgaataatt 414  Q
    ||||||||||||||||||||||| ||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22807742 atttggtagcactacggcaccctgaacacaaaca-tttttttgtcaaaaatgattttgaaaggaatatacaaatatctgcatcattatggatgaataatt 22807644  T
Q  415 taatatacaaagc----atatactctcacatatagtgtccatcaagtgtcatatcccgctaaagttagtagactgcagtgtcttttaagcgtgtaagatc 510  Q
    |||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22807643 taatatacaaagcatatatatactctcacatatagtgtccatcaagtgtaatatcccgctaaagttagtagactgcagtgtcttttaaacgtgtaagatc 22807544  T
Q  511 attatgggaaatttgagttttatgcttgtgtgaagctgcatgtatgttttcttgtctgaat 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22807543 attatgggaaatttgagttttatgcttgtgtgaagctgcatgtatgttttcttgtctgaat 22807483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 47 - 348
Target Start/End: Complemental strand, 22819507 - 22819206
Alignment:
Q  47 aattaacctcaccatgtt-atatgttggtggaatactattagcaatatgtccaacaacatcagctttttcaacaacaaatttcataggtggatcaaattt 145  Q
    |||||||||||||||||| | ||||||||||||||  ||||  || || | ||||||||| ||||| |||||||| |||||||||||| |||| ||||||    
T  22819507 aattaacctcaccatgttgacatgttggtggaatatcattacgaacatattcaacaacatgagcttattcaacaataaatttcataggaggataaaattt 22819408  T
Q  146 aggataactaatcattcgaccaaccatatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcacctatacatttggaa 245  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||||| ||| ||||||    
T  22819407 aggataactaatcgttcgaccaatcatatccttaagattaattctaagtcaacccaaatccataaaagttatcgtgacccaagcacctaaacacttggaa 22819308  T
Q  246 ttcattgttgtttagatcgacaaatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaaacacaa 345  Q
    |||| |||||||| |||| || ||||||||||||||||  ||||||||||||||||||||| ||||||| ||| |||||| || |||||||| |||||||    
T  22819307 ttcaatgttgtttggatcaaccaatgttgcttaacgatcaatttgatcaccaaaatctccgacaaacat-tttagtagcattatggcacccttaacacaa 22819209  T
Q  346 aca 348  Q
    |||    
T  22819208 aca 22819206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 26778468 - 26778534
Alignment:
Q  168 accatatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcaccta 234  Q
    |||| |||||||||||||||||||||||||||||||||||  || |||||| |||||||||||||||    
T  26778468 accagatccttaagattaattctaaatcaacccaaacccactaaagtcatcatgacccaagcaccta 26778534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 440
Target Start/End: Original strand, 26778739 - 26778823
Alignment:
Q  357 gtcaaaaatgattttgaaagga-atatacaaatatatgcatcattatggatgaataatttaatatacaaagcatatactctcaca 440  Q
    ||||||||||||||||||| || |||||||||||| |||||||||||| |||||| |||||| | ||||| |||||| |||||||    
T  26778739 gtcaaaaatgattttgaaaagagatatacaaatatgtgcatcattatgaatgaattatttaaaaaacaaaacatataatctcaca 26778823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 440
Target Start/End: Original strand, 26780764 - 26780848
Alignment:
Q  357 gtcaaaaatgattttgaaagga-atatacaaatatatgcatcattatggatgaataatttaatatacaaagcatatactctcaca 440  Q
    ||||||||||||||||||| || |||||||||||| |||||||||||| |||||| |||||| | ||||| |||||| |||||||    
T  26780764 gtcaaaaatgattttgaaaagagatatacaaatatgtgcatcattatgaatgaattatttaaaaaacaaaacatataatctcaca 26780848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 26776178 - 26776244
Alignment:
Q  168 accatatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcaccta 234  Q
    |||| |||||||||||||||| ||||||||||||||||||  || |||||| |||||||||||||||    
T  26776178 accagatccttaagattaattgtaaatcaacccaaacccactaaagtcatcatgacccaagcaccta 26776244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 26780484 - 26780550
Alignment:
Q  168 accatatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcaccta 234  Q
    |||| |||||||||||||||||||||||||||||||||||  || |||||| ||||||| |||||||    
T  26780484 accagatccttaagattaattctaaatcaacccaaacccactaaagtcatcatgacccatgcaccta 26780550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 26777937 - 26778014
Alignment:
Q  364 atgattttgaaagga-atatacaaatatatgcatcattatggatgaataatttaatatacaaagcatatactctcaca 440  Q
    |||||||||||| || |||||||||||| |||||||||||| |||||| |||||| ||||||| |||||| |||||||    
T  26777937 atgattttgaaaagagatatacaaatatgtgcatcattatgaatgaattatttaaaatacaaaacatataatctcaca 26778014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 26778646 - 26778726
Alignment:
Q  268 aatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaaacacaaaca 348  Q
    |||||||| |||||| | |||||||||| |||||||   ||||||||||||||||| | |||  |||| | ||||||||||    
T  26778646 aatgttgcataacgactaatttgatcacaaaaatcttgagcaaacatatttggtagtattacaacaccttgaacacaaaca 26778726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 26780671 - 26780751
Alignment:
Q  268 aatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaaacacaaaca 348  Q
    |||||||| |||||| | |||||||||| |||||||   ||||||||||||||||| | |||  |||| | ||||||||||    
T  26780671 aatgttgcataacgactaatttgatcacaaaaatcttgagcaaacatatttggtagtattacaacaccttgaacacaaaca 26780751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 47 - 348
Target Start/End: Original strand, 5618392 - 5618693
Alignment:
Q  47 aattaacctcaccatgtt-atatgttggtggaatactattagcaatatgtccaacaacatcagctttttcaacaacaaatttcataggtggatcaaattt 145  Q
    |||||||||||||||||| | ||||||||||||||  ||||  || || | ||||||||| ||||| |||||||| |||||||||||| |||| ||||||    
T  5618392 aattaacctcaccatgttgacatgttggtggaatatcattacgaacatattcaacaacatgagcttattcaacaataaatttcataggaggataaaattt 5618491  T
Q  146 aggataactaatcattcgaccaaccatatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcacctatacatttggaa 245  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||||| ||| ||||||    
T  5618492 aggataactaatcgttcgaccaatcatatccttaagattaattctaagtcaacccaaatccataaaagttatcgtgacccaagcacctaaacacttggaa 5618591  T
Q  246 ttcattgttgtttagatcgacaaatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaaacacaa 345  Q
    |||| |||||||| |||| || ||||||||||||||||  ||||||||||||||||||||| ||||||| ||| |||||| || |||||||| |||||||    
T  5618592 ttcaatgttgtttggatcaaccaatgttgcttaacgatcaatttgatcaccaaaatctccgacaaacat-tttagtagcattatggcacccttaacacaa 5618690  T
Q  346 aca 348  Q
    |||    
T  5618691 aca 5618693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 32009816 - 32009621
Alignment:
Q  44 gaaaattaacctcaccatgtt-atatgttggtggaatactattagcaatatgtccaacaacatcagctttttcaacaacaaatttcataggtggatcaaa 142  Q
    ||||||||||||||||||||| |||||  |||||||||| |||||  ||||| ||||||||| |||  ||||||||||||||||||||| |  |||||||    
T  32009816 gaaaattaacctcaccatgttgatatgacggtggaataccattagacatatgaccaacaacaccaggcttttcaacaacaaatttcataagatgatcaaa 32009717  T
Q  143 tttaggataactaatcattcgaccaacca----tatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcaccta 234  Q
    ||||||||||||||   || |||||||||    ||||||||| |||||||||||||| ||||||| ||| ||| |||||| |||| ||||||||||    
T  32009716 tttaggataactaaatgtttgaccaaccaaccttatccttaatattaattctaaatcgacccaaaaccacaaaagtcatcatgactcaagcaccta 32009621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 246 - 426
Target Start/End: Complemental strand, 32009535 - 32009354
Alignment:
Q  246 ttcattgttgtttagatcgacaaatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaaacacaa 345  Q
    ||||||||||||| ||| ||| |||||||  |||||| | | ||||||||||||||||||  |||||||||||||||||| |||   ||| | |||||||    
T  32009535 ttcattgttgtttggattgaccaatgttggataacgaataaattgatcaccaaaatctccaacaaacatatttggtagcattacactaccttgaacacaa 32009436  T
Q  346 acannnnnnnngtcaaaaatgattttgaaagga-atatacaaatatatgcatcattatggatgaataatttaatatacaaag 426  Q
    |||         ||||||| |||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  32009435 acaaaatttttttcaaaaaagattttgaaaagagatatacaaatatgtgcatcattatggatgaaaaatttaatatacaaag 32009354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 6668343 - 6668147
Alignment:
Q  41 actgaaaattaacctcaccatgtt-atatgttggtggaatactattagcaatatgtccaacaacatcagctttttcaacaacaaatttcataggtg--ga 137  Q
    ||||||||| ||| | |||||||| |||||  ||||||||||||||||  | ||| ||| ||||||||||| ||||||||||||||||||||||    ||    
T  6668343 actgaaaataaacatgaccatgttgatatggcggtggaatactattaggcacatgaccatcaacatcagctatttcaacaacaaatttcataggaaatga 6668244  T
Q  138 tcaaatttaggataactaatcattcgaccaaccatatccttaagattaattctaaatcaacccaaacccataaaggtcatcgtgacccaagcaccta 234  Q
    ||||||||||||||  | ||| ||||| || |||| ||||||||| ||||| ||||||||| |||||||| |||  ||||||||||| |||| ||||    
T  6668243 tcaaatttaggatatatcatcgttcgatcatccatgtccttaagaataattttaaatcaactcaaacccacaaaattcatcgtgaccaaagctccta 6668147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 6668065 - 6667957
Alignment:
Q  240 ttggaattcattgttgtttagatcgacaaatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaa 339  Q
    ||||||||||||||||||| |||| || ||| |||| |||| |  ||||||||||||||||||||  | |||| |||||||||||| ||||| ||||  |    
T  6668065 ttggaattcattgttgtttggatcaaccaatattgcataacaaccgatttgatcaccaaaatctcaagtaaacgtatttggtagcattacggtaccccga 6667966  T
Q  340 acacaaaca 348  Q
    |||||||||    
T  6667965 acacaaaca 6667957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 25270968 - 25270916
Alignment:
Q  135 ggatcaaatttaggataactaatcattcgaccaaccatatccttaagattaat 187  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25270968 ggatcaaatttaggataaataatcattcaaccaaccatatccttaagattaat 25270916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 17081704 - 17081589
Alignment:
Q  109 ctttttcaacaacaaatttcataggtggatcaaatttaggataactaatcattcgaccaaccatatccttaagattaattctaaatcaacccaaacccat 208  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||| |||| ||| ||| |||||||||||||||| | |||||| ||     
T  17081704 ctttttcatcaacaaatttcataggaagatcaaatttaggataactaatcgttcgacaaaccctattcttgagattaattctaaatcgatccaaactcac 17081605  T
Q  209 aaaggtcatcgtgacc 224  Q
    ||| ||||||||||||    
T  17081604 aaaagtcatcgtgacc 17081589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 17081342 - 17081280
Alignment:
Q  379 atatacaaatatatgcatcattatggatgaataatttaatatacaaagcatatactctcacat 441  Q
    |||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  17081342 atatacaagtatgtgcatcatgatggacgaataatttaaaatacaaagcatatactctcacat 17081280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 17081488 - 17081383
Alignment:
Q  243 gaattcattgttgtttagatcgacaaatgttgcttaacgattgatttgatcaccaaaatctccggcaaacatatttggtagcactacggcaccctaaaca 342  Q
    |||||||||||||||| ||||||| |||||||| ||| ||  ||||  ||||  ||||||||  |||||||||||||||| || |||  |||||| ||||    
T  17081488 gaattcattgttgtttggatcgaccaatgttgcataaagaccgattaaatcattaaaatctctagcaaacatatttggtaacattacaacaccctgaaca 17081389  T
Q  343 caaaca 348  Q
    ||||||    
T  17081388 caaaca 17081383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 28969506 - 28969375
Alignment:
Q  100 caacatcagctttttcaacaacaaatttcataggtggatcaaatttaggataactaatcattcgaccaaccatatccttaagattaattctaaatcaacc 199  Q
    ||||||||| |||||||| |||||||||| |||| | || ||||||||||||| | ||| ||||||||||| |||||||||||||||  | ||||  | |    
T  28969506 caacatcagttttttcaataacaaatttcttaggagtattaaatttaggataaattatcgttcgaccaaccctatccttaagattaacaccaaattgatc 28969407  T
Q  200 caaacccataaaggtcatcgtgacccaagcacc 232  Q
    ||| |||| ||||| | ||||||||||||||||    
T  28969406 caatcccacaaagg-cttcgtgacccaagcacc 28969375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 29024377 - 29024291
Alignment:
Q  97 caacaacatcagctttttcaacaacaaatttcataggtggatcaaatttaggataactaatcattcgaccaaccatatccttaagat 183  Q
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T  29024377 caacaacatcaactatttcaacaacgaattttataggagtattaaatttaggatagttaattgttcgactaaccctatccttaagat 29024291  T

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