View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15415_low_11 (Length: 466)

Name: NF15415_low_11
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15415_low_11
NF15415_low_11
[»] chr1 (17 HSPs)
chr1 (2-243)||(1674364-1674605)
chr1 (355-447)||(1674160-1674251)
chr1 (165-244)||(11237705-11237784)
chr1 (1-86)||(40518969-40519054)
chr1 (1-86)||(30280261-30280346)
chr1 (17-89)||(52957493-52957565)
chr1 (169-244)||(23697528-23697603)
chr1 (6-91)||(36319720-36319805)
chr1 (180-244)||(31622889-31622953)
chr1 (6-91)||(11237830-11237916)
chr1 (169-241)||(2656149-2656219)
chr1 (6-91)||(13254509-13254594)
chr1 (1-45)||(23699198-23699242)
chr1 (6-89)||(4395798-4395881)
chr1 (28-91)||(19269961-19270024)
chr1 (7-48)||(10384085-10384126)
chr1 (204-244)||(786691-786731)
[»] chr6 (8 HSPs)
chr6 (165-244)||(7972369-7972448)
chr6 (2-84)||(14093522-14093604)
chr6 (168-244)||(21527031-21527107)
chr6 (6-91)||(9353342-9353424)
chr6 (6-91)||(2437580-2437665)
chr6 (6-75)||(23410740-23410809)
chr6 (11-91)||(8049436-8049516)
chr6 (6-91)||(25056753-25056838)
[»] chr4 (9 HSPs)
chr4 (167-244)||(24538014-24538091)
chr4 (167-244)||(38433952-38434029)
chr4 (169-244)||(37371135-37371210)
chr4 (6-91)||(49263246-49263331)
chr4 (7-91)||(54982502-54982586)
chr4 (9-91)||(38044582-38044664)
chr4 (169-241)||(45635034-45635104)
chr4 (213-243)||(19443154-19443184)
chr4 (215-244)||(49263547-49263576)
[»] scaffold0006 (2 HSPs)
scaffold0006 (165-244)||(46027-46106)
scaffold0006 (165-216)||(46337-46388)
[»] chr8 (14 HSPs)
chr8 (169-244)||(9455518-9455593)
chr8 (6-86)||(1256445-1256525)
chr8 (179-244)||(2742651-2742716)
chr8 (6-91)||(34146459-34146544)
chr8 (6-88)||(34039146-34039228)
chr8 (165-244)||(3443431-3443510)
chr8 (6-91)||(5871029-5871110)
chr8 (1-91)||(3741903-3741993)
chr8 (2-40)||(11087382-11087420)
chr8 (1-86)||(36682791-36682876)
chr8 (10-49)||(1358671-1358710)
chr8 (17-48)||(14896877-14896908)
chr8 (2-49)||(27231918-27231965)
chr8 (213-244)||(34146749-34146780)
[»] chr7 (13 HSPs)
chr7 (169-244)||(4962661-4962736)
chr7 (165-244)||(24393807-24393886)
chr7 (165-244)||(25290903-25290982)
chr7 (169-243)||(4678815-4678889)
chr7 (169-244)||(39434384-39434459)
chr7 (171-244)||(46671746-46671819)
chr7 (6-90)||(4567566-4567650)
chr7 (168-244)||(15643588-15643664)
chr7 (6-91)||(12394395-12394480)
chr7 (1-86)||(39427633-39427718)
chr7 (172-244)||(14771141-14771213)
chr7 (172-244)||(15221593-15221665)
chr7 (1-86)||(29664531-29664616)
[»] chr3 (15 HSPs)
chr3 (169-243)||(25841574-25841648)
chr3 (165-237)||(13779099-13779171)
chr3 (1-86)||(38750844-38750929)
chr3 (173-244)||(21959434-21959505)
chr3 (2-48)||(6749237-6749283)
chr3 (7-89)||(21934281-21934363)
chr3 (4-48)||(6472520-6472564)
chr3 (165-237)||(7259419-7259490)
chr3 (6-60)||(376000-376054)
chr3 (1-85)||(21915696-21915780)
chr3 (5-48)||(6512349-6512392)
chr3 (1-91)||(2599302-2599392)
chr3 (9-91)||(34668936-34669018)
chr3 (10-87)||(45759678-45759755)
chr3 (213-245)||(21916039-21916071)
[»] scaffold1130 (1 HSPs)
scaffold1130 (165-241)||(661-737)
[»] chr2 (19 HSPs)
chr2 (127-244)||(4959089-4959206)
chr2 (165-245)||(25965360-25965440)
chr2 (167-244)||(12412896-12412973)
chr2 (167-244)||(12424956-12425033)
chr2 (11-91)||(41541312-41541392)
chr2 (6-81)||(20171192-20171267)
chr2 (169-244)||(27746920-27746995)
chr2 (166-244)||(34424488-34424566)
chr2 (2-91)||(16806381-16806470)
chr2 (2-91)||(16845662-16845751)
chr2 (6-91)||(45273165-45273250)
chr2 (182-237)||(7485813-7485868)
chr2 (6-85)||(7486062-7486141)
chr2 (2-89)||(33024511-33024598)
chr2 (17-91)||(21252844-21252918)
chr2 (10-46)||(4316914-4316950)
chr2 (6-89)||(15507714-15507797)
chr2 (6-49)||(25714148-25714191)
chr2 (6-49)||(36243811-36243854)
[»] chr5 (16 HSPs)
chr5 (1-84)||(249279-249362)
chr5 (167-242)||(16365999-16366074)
chr5 (169-244)||(20202119-20202194)
chr5 (165-244)||(36059662-36059741)
chr5 (165-244)||(17558249-17558328)
chr5 (2-88)||(8544489-8544575)
chr5 (10-88)||(39585612-39585690)
chr5 (2-91)||(36437096-36437185)
chr5 (6-91)||(17201657-17201741)
chr5 (6-91)||(28620304-28620389)
chr5 (165-242)||(32717715-32717791)
chr5 (1-86)||(43346429-43346514)
chr5 (8-91)||(12436484-12436567)
chr5 (190-244)||(14655282-14655335)
chr5 (11-89)||(17200330-17200407)
chr5 (6-78)||(32474449-32474521)
[»] scaffold0005 (2 HSPs)
scaffold0005 (6-88)||(256995-257077)
scaffold0005 (179-244)||(271973-272038)
[»] scaffold0097 (1 HSPs)
scaffold0097 (165-244)||(48596-48674)
[»] scaffold0841 (1 HSPs)
scaffold0841 (6-49)||(4472-4515)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 1674605 - 1674364
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcatcaatagtatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  1674605 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcgtcaatagtact 1674506  T
Q  102 gatggattttgatttaaaataaagtttgtttgttatgacataaagataaaacgtgcnnnnnnntaggaatttgttgaagaaagagagtagtaactaacaa 201  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||    
T  1674505 aatggattttgatttaaaataaagtttgtttgttatgacataaagataaaacgcgcaaaaaaataggaatttgttgaagaaagagagtagtaactaacaa 1674406  T
Q  202 ccgtttgttagatattaaatttattggaaagataaaatgtgt 243  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  1674405 ccgtttgttagatattaaatttattgaaaagataaaatgtgt 1674364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 355 - 447
Target Start/End: Complemental strand, 1674251 - 1674160
Alignment:
Q  355 gaacggagggagtaaattgcaagatgttgatccaactgttcctttattgctagtatttgcaaatttgaaagagagatgaactaatctagtagt 447  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1674251 gaacggagggagtaaattgcaagatgttgatccaattgttcctttattgctagtatttgc-aatttgaaagagagatgaactaatctagtagt 1674160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 11237784 - 11237705
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| |||||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||    
T  11237784 taggaatttgttggagaaagagagtagtaactaacaattgttcgttacatattaaatttattggaaagataaaatgtgtg 11237705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40519054 - 40518969
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||  ||||||| | |||||| ||||||||||    
T  40519054 aactgcatgaatgttcaaaaggaagaaacagtggaagactcattggaaccgctgatggaaggtgaagagggagaagtagttgaaga 40518969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30280261 - 30280346
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| |||||||||||| |||||||||||||||||||| | |||||  ||||||| | |||||| ||||||||||    
T  30280261 aactccatgaatgttgaaaaggaagaaatagtggaagactcattggaactgctgatggaaggtgaagagggagaagtagttgaaga 30280346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 52957493 - 52957565
Alignment:
Q  17 aaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 89  Q
    |||| |||||||||||||||||||||||||||  |||||||  ||||||| ||| ||||||||||||||||||    
T  52957493 aaaaagaagaaagagtggaagactcattggaatggttgatgggaggtgaagatgaagaaatagttgaagactc 52957565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 23697603 - 23697528
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| ||||| |||||| || |||||||  |||| ||| ||||||||||||||||||||||||| ||||||    
T  23697603 aatttgttggagaaatagagtaatagctaacaattgtttcttacatattaaatttattggaaagataaagtgtgtg 23697528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 36319805 - 36319720
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||||||||| |||||| ||| ||| |||| ||||||| | |||||| ||||||| |  |||||||||||||| ||||||    
T  36319805 catgaatgtttaaaagaaagaaaaagtagaatactcgttggaactgctgatgagaggtgaagagagagaaatagttgaaaactcat 36319720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 31622953 - 31622889
Alignment:
Q  180 gaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||| |||||||||||||||  ||| |||| ||||||||||||||| ||||||||| ||||||    
T  31622953 gaaagatagtagtaactaacaattgttggttacatattaaatttattgtaaagataaagtgtgtg 31622889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 11237916 - 11237830
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagact-cattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| ||||| |||||||||| ||| ||| ||||||||| | |||||  || |||| |||||||| |||||||||||||||    
T  11237916 catgaatgttcaaaagaaagaaagagtcgaaaacttcattggaactgctgatgggagctgaagatggagaagtagttgaagactcat 11237830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 2656149 - 2656219
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgt 241  Q
    ||||||||| | |||||||||||||||||||||  ||||||   |||||||||||||| ||||||| ||||||    
T  2656149 aatttgttggaaaaagagagtagtaactaacaattgtttgt--catattaaatttatttgaaagatcaaatgt 2656219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 13254594 - 13254509
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||  |||||||||||| ||| |||||||| ||||||  | |||||| ||||||| |  ||| |||||||||||||||||    
T  13254594 catgaatgtccaaaaggaagaaaaagtagaagactcgttggaattgctgatgagaggtgaagagtgagcaatagttgaagactcat 13254509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23699242 - 23699198
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattg 45  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||    
T  23699242 aactccatgaatgttcaaaaggaagaaagagtggaagactaattg 23699198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 4395881 - 4395798
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 89  Q
    |||||||||| |||| ||| |||||||| ||||||||||||||  | |||||  ||||||| |   ||||||||||||||||||    
T  4395881 catgaatgttcaaaacgaaaaaagagtgaaagactcattggaatggatgatgggaggtgaatagaaagaaatagttgaagactc 4395798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 19269961 - 19270024
Alignment:
Q  28 agagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||||||||||||| | |||| | |||||  ||||||| | ||||||||||||||||||||||    
T  19269961 agagtggaagactcactagaactgctgatgggaggtgaagacggagaaatagttgaagactcat 19270024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 10384126 - 10384085
Alignment:
Q  7 atgaatgtttaaaaggaagaaagagtggaagactcattggaa 48  Q
    ||||||||| |||| ||||||||| |||||||||||||||||    
T  10384126 atgaatgttcaaaaagaagaaagaatggaagactcattggaa 10384085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 786731 - 786691
Alignment:
Q  204 gtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||||| |||||||||||||| |||||||||| ||||||    
T  786731 gtttgttacatattaaatttatttgaaagataaattgtgtg 786691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 7972448 - 7972369
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| ||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||    
T  7972448 taggaatttgttggagaaagagagtagtaaccaacaatggtttgttacatattaaatttattggaaagataaaatgtgtg 7972369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 14093604 - 14093522
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaa 84  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||| | |||||| ||||||| | |||||||||||||||    
T  14093604 acttcatgaatgtttaaaatgaagaaaaagtagaagactcattggaactgatgatgagaggtgaagagggagaaatagttgaa 14093522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 21527107 - 21527031
Alignment:
Q  168 gaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||||||| ||||| ||||||||||| |||||  |||||||| ||||||||||||||| ||||||||| ||||||    
T  21527107 gaatttgttggagaaaaagagtagtaaccaacaattgtttgttacatattaaatttattgaaaagataaagtgtgtg 21527031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 9353342 - 9353424
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| |||||||||||||||| |||||||||||| |||   | |||| ||||||| | ||||||||||||||||||||||    
T  9353342 catgaatgttcaaaaggaagaaagagtagaagactcattgaaac---tcatgagaggtgaagagggagaaatagttgaagactcat 9353424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 2437665 - 2437580
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| |||||||||||| ||||||||| || ||||||    |||||| ||||||| | ||||||||||||||||||||||    
T  2437665 catgaatgttcaaaaggaagaaaaagtggaagattcgttggaatttctgatgagaggtgaagaaggagaaatagttgaagactcat 2437580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 23410740 - 23410809
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaa 75  Q
    |||||||||| |||||||||||||||| |||||||||||||| | |||||||  ||||||| | ||||||    
T  23410740 catgaatgttcaaaaggaagaaagagtcgaagactcattggaccggttgatgggaggtgaagagggagaa 23410809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 8049436 - 8049516
Alignment:
Q  11 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||| |||||| ||||| |||||||||||| ||||||  |||||||| ||||||| | |||  |||||||||| ||||||    
T  8049436 atgttcaaaagggagaaaaagtggaagactcgttggaattgttgatgagaggtgaagagggaacaatagttgaatactcat 8049516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 25056753 - 25056838
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| ||| | |||||| ||| |||||||| ||| ||  |||||||| ||||||| | | || |||||||||||||||||    
T  25056753 catgaatgttcaaaggaaagaaaaagttgaagactcgttgaaattgttgatgagaggtgaagaggaagcaatagttgaagactcat 25056838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 24538091 - 24538014
Alignment:
Q  167 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  24538091 ggaatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 24538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 38434029 - 38433952
Alignment:
Q  167 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||  ||||| |||||||||||| ||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  38434029 ggaatttgttagagaaatagagtagtaactcacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 38433952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 37371210 - 37371135
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| | |||||||||||||||||||||  |||||||  ||||||||||||||| ||||||||| ||||||    
T  37371210 aatttgttggaaaaagagagtagtaactaacaattgtttgttgtatattaaatttattgaaaagataaagtgtgtg 37371135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 49263246 - 49263331
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| ||| |||| ||| |||||||||||| ||||||  | |||||| ||||||| | |||| |||||||||||||||||    
T  49263246 catgaatgttcaaatggaaaaaaaagtggaagactcgttggaattgctgatgagaggtgaagagggagcaatagttgaagactcat 49263331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 54982586 - 54982502
Alignment:
Q  7 atgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||||||||||||||| | |||||||||| |||||   | |||||| ||||||| | |||| ||||| |||||||||||    
T  54982586 atgaatgtttaaaaggaagaaaaaatggaagactcgttggatttgctgatgagaggtgaagagggagcaatagctgaagactcat 54982502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 38044664 - 38044582
Alignment:
Q  9 gaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||||| |||| ||||||| |||||||||||| || |||  |  ||||| ||||||| |||||| |||||||||||||||||    
T  38044664 gaatgttcaaaatgaagaaaaagtggaagactcgttagaattgccgatgagaggtgaagatggagcaatagttgaagactcat 38044582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 45635104 - 45635034
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgt 241  Q
    ||||||||| | |||||||||||||||||||||  ||||||   |||||||||||||| ||||||| ||||||    
T  45635104 aatttgttggaaaaagagagtagtaactaacaattgtttgt--catattaaatttatttgaaagatcaaatgt 45635034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 19443184 - 19443154
Alignment:
Q  213 atattaaatttattggaaagataaaatgtgt 243  Q
    |||||||||||||||||||||||||||||||    
T  19443184 atattaaatttattggaaagataaaatgtgt 19443154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 49263547 - 49263576
Alignment:
Q  215 attaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||||||||||||||||||||    
T  49263547 attaaatttattggaaagataaaatgtgtg 49263576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 46106 - 46027
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| |||||||||||||| ||||| ||  |||||||| ||||||||||||||||||||||||||||||||    
T  46106 taggaatttgttggagaaagagagtagtcactaaaaattgtttgttacatattaaatttattggaaagataaaatgtgtg 46027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 46388 - 46337
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatat 216  Q
    ||||||||||||| |||||||||||||||||||| ||  |||||||| ||||    
T  46388 taggaatttgttggagaaagagagtagtaactaaaaattgtttgttacatat 46337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 9455518 - 9455593
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  9455518 aatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaaaataaaatgtgtg 9455593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 1256525 - 1256445
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||||||| | |||||||||||| ||||||||| |||||||||| |||||||| ||||||| | |||||||||||||||||    
T  1256525 catgaatgctcaaaaggaagaaaaagtggaagattcattggaacggttgatgagaggtgaagagggagaaatagttgaaga 1256445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 2742716 - 2742651
Alignment:
Q  179 agaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| || ||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  2742716 agaaagagactactaactaacaattgtttgttacatattaaatttattggaaagataaaatgtgtg 2742651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 34146459 - 34146544
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| |||||||||||| |||||||||| |||| |||| | |||||| |||||||   ||||||||||||||||||||||    
T  34146459 catgaatgttcaaaaggaagaaatagtggaagacccattagaactgctgatgagaggtgaagggggagaaatagttgaagactcat 34146544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 34039146 - 34039228
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 88  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||| | |||||  ||||||| ||||||||||| |||||||||    
T  34039146 catgaatgttcaaaagaaagaaaaagtagaagactcattggaacggctgatgggaggtgaagatggagaaatacttgaagact 34039228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 3443510 - 3443431
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||  ||||| |||||||||||| | ||  |||||||| ||||||||||||||||| ||||||| ||||||    
T  3443510 taggaatttgtttgagaaaaagagtagtaactcataattgtttgttacatattaaatttattggatagataaagtgtgtg 3443431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 5871029 - 5871110
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| |||||||||||| | |||||||||||||| |||   |||||| ||||||| | |||||||||||| |||||||||    
T  5871029 catgaatgttcaaaaggaagaaataatggaagactcattgaaac---tgatgagaggtgaaga-ggagaaatagttaaagactcat 5871110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3741903 - 3741993
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||| |||||||||| ||||||||||||||||||||||||| || |||  |||||||  |  |||| | || ||| |||||||||||||||    
T  3741903 aactccatgaatgttcaaaaggaagaaagagtggaagactcgttagaattgttgatggaaaatgaagagggggaagtagttgaagactcat 3741993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 11087382 - 11087420
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagact 40  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  11087382 acttcatgaatgtttaaaaggaagaaaaagtggaagact 11087420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36682791 - 36682876
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| |||||||| ||| |||||||||||||||||||| | | |||  ||||||| | |||||| |||| |||||    
T  36682791 aactccatgaatgttcaaaaggaaaaaatagtggaagactcattggaactgctaatggaaggtgaagaaggagaagtagtcgaaga 36682876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 1358710 - 1358671
Alignment:
Q  10 aatgtttaaaaggaagaaagagtggaagactcattggaac 49  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  1358710 aatgttcaaaaggaagaaagagcggaagactcattggaac 1358671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 14896877 - 14896908
Alignment:
Q  17 aaaaggaagaaagagtggaagactcattggaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  14896877 aaaaggaagaaagagtggaagactcattggaa 14896908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 27231918 - 27231965
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaac 49  Q
    |||||||||||||| ||||| ||| || ||||||||||||||||||||    
T  27231918 acttcatgaatgttcaaaagaaagtaaaagtggaagactcattggaac 27231965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 34146749 - 34146780
Alignment:
Q  213 atattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||||||||||||||||||||||    
T  34146749 atattaaatttattggaaagataaaatgtgtg 34146780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 4962736 - 4962661
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  4962736 aatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 4962661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 24393886 - 24393807
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| |||||||||||||||| ||| ||  |||||||| ||||||||||||||||||||||||| ||||||    
T  24393886 taggaatttgttggagaaagagagtagtaattaataattgtttgttacatattaaatttattggaaagataaagtgtgtg 24393807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 25290903 - 25290982
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| |||| || |||||||||||||||  |||||||| ||||||||||||||||||  ||||||||||||    
T  25290903 taggaatttgttggagaaggaaagtagtaactaacaattgtttgttacatattaaatttattggaatcataaaatgtgtg 25290982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 4678815 - 4678889
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgt 243  Q
    ||||||||| | |||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||| |||||    
T  4678815 aatttgttggataaagagagtagtaactaataattgtttgttacatattaaatttattggaaagataaagtgtgt 4678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 39434384 - 39434459
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| ||||||||||||| |||||| ||   ||||||| ||||||||||||||||||||||||| ||||||    
T  39434384 aatttgttggagaaagagagtagcaactaaaaattatttgttacatattaaatttattggaaagataaagtgtgtg 39434459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 46671819 - 46671746
Alignment:
Q  171 tttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||| ||||||||||| |||||||||||  |||||||| | ||||||||||||||||| ||||| ||||||    
T  46671819 tttgttgtagaaagagagttgtaactaacaattgtttgttacacattaaatttattggaaaaataaagtgtgtg 46671746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 4567566 - 4567650
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactca 90  Q
    |||||||||| ||||||||||||  ||||||||||| ||||||  | |||||| ||||||| | |||| ||||||||||||||||    
T  4567566 catgaatgttcaaaaggaagaaaatgtggaagactcgttggaattgctgatgagaggtgaagagggagcaatagttgaagactca 4567650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 15643588 - 15643664
Alignment:
Q  168 gaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||||||| ||||||||| | |||||||| ||   ||| ||| ||||||||||||||||||||||||||||||||    
T  15643588 gaatttgttggagaaagagattcgtaactaataattttttcttaaatattaaatttattggaaagataaaatgtgtg 15643664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 12394395 - 12394480
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| |||||||| ||||||||||||||||| || |   | |||||| || |||| | ||||||||||||||||||||||    
T  12394395 catgaatgttcaaaaggaaaaaagagtggaagactcaatgaagttgctgatgagagttgaagagggagaaatagttgaagactcat 12394480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 39427633 - 39427718
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| ||||| |||||| |||||||||||||||||||| | |||||  ||||||| | |||||| ||||| ||||    
T  39427633 aactccatgaatgttcaaaagaaagaaatagtggaagactcattggaactgctgatggaaggtgaagagggagaagtagttaaaga 39427718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 14771213 - 14771141
Alignment:
Q  172 ttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||| |||||||||||||||||||| ||   ||||||| ||||| ||||||||| ||||||||| ||||||    
T  14771213 ttgttggagaaagagagtagtaactaagaattttttgttacatatttaatttattgaaaagataaagtgtgtg 14771141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 15221665 - 15221593
Alignment:
Q  172 ttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||| |||||||||||||||||||| ||   ||||||| ||||| ||||||||| ||||||||| ||||||    
T  15221665 ttgttggagaaagagagtagtaactaagaattttttgttacatatttaatttattgaaaagataaagtgtgtg 15221593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 29664531 - 29664616
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| |||| ||| ||||||||||||||||||| |||| | |||||  ||||||| |  ||||| ||||||||||    
T  29664531 aactccatgaatgttcaaaaagaaaaaagagtggaagactcattagaactgctgatggaaggtgaagagagagaagtagttgaaga 29664616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 25841648 - 25841574
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgt 243  Q
    ||||||||| |||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||||||||    
T  25841648 aatttgttggagaaagagagtagtaactaacaattgtttgttatttattaaatttattggaaagataaaatgtgt 25841574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 13779099 - 13779171
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaa 237  Q
    ||||||||||||| |||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||    
T  13779099 taggaatttgttggagaaagagagtagtaactaacaattgtctgttacatattaaatttattggaaagataaa 13779171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 38750929 - 38750844
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| | |||||  ||||||| | |||||| ||||||||||    
T  38750929 aactccatgaatgttcaaaaggaagaaagagtggaagactcattgaaactgctgatggaaggtgaagagggagaagtagttgaaga 38750844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 21959505 - 21959434
Alignment:
Q  173 tgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||||||||||||||||||||||||||  |||||||| |||||| ||||||| |||| ||||| ||||||    
T  21959505 tgttgaagaaagagagtagtaactaacaattgtttgttacatattatatttattagaaatataaagtgtgtg 21959434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 6749237 - 6749283
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaa 48  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  6749237 acttcatgaatgttcaaaaggaagaaagagtggaagactcattggaa 6749283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 21934363 - 21934281
Alignment:
Q  7 atgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 89  Q
    ||||||||| |||| ||| ||| |||||||||||||||||||| |||||||  ||||||| | |||||| |||||||||||||    
T  21934363 atgaatgttcaaaaagaataaatagtggaagactcattggaactgttgatggaaggtgaagagggagaagtagttgaagactc 21934281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 6472564 - 6472520
Alignment:
Q  4 ttcatgaatgtttaaaaggaagaaagagtggaagactcattggaa 48  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  6472564 ttcatgaatgttcaaaaggaagaaagagtggaagactcattggaa 6472520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 7259490 - 7259419
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaa 237  Q
    ||||| ||||||| ||||||||| |||||||||||||  |||||||| ||||||| |||||||||||||||||    
T  7259490 taggagtttgttggagaaagaga-tagtaactaacaattgtttgttacatattaattttattggaaagataaa 7259419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 376000 - 376054
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgata 60  Q
    |||||||||| |||||||| |||||||| ||||||||||||||| | ||||||||    
T  376000 catgaatgttcaaaaggaataaagagtgaaagactcattggaacggctgatgata 376054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 21915696 - 21915780
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaag 85  Q
    |||| |||||||||| |||||||| || ||||||||||||  ||||||| |||||||  ||||||||| | ||  ||||||||||    
T  21915696 aactccatgaatgttcaaaaggaataacgagtggaagacttgttggaactgttgatggaaggtgaaaaggaagtcatagttgaag 21915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 6512392 - 6512349
Alignment:
Q  5 tcatgaatgtttaaaaggaagaaagagtggaagactcattggaa 48  Q
    |||||||| || ||||||||||||||||||||| ||||||||||    
T  6512392 tcatgaattttcaaaaggaagaaagagtggaaggctcattggaa 6512349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2599302 - 2599392
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||| |||||||||| |||||||||| | |||||||||||| ||||||    | |||| ||||||| |  ||| |||||||||||||||||    
T  2599302 aactccatgaatgttcaaaaggaagagaaagtggaagactcgttggaattactaatgaaaggtgaagagagagcaatagttgaagactcat 2599392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 34668936 - 34669018
Alignment:
Q  9 gaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||||| |||| ||||||| |||||||||||| ||| ||  | ||||||  |||||| | |||| |||||||||||||||||    
T  34668936 gaatgttcaaaaagaagaaaaagtggaagactcgttgaaattgctgatgaagggtgaagagggagcaatagttgaagactcat 34669018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 45759755 - 45759678
Alignment:
Q  10 aatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagac 87  Q
    |||||| |||| ||| |||||||||||||||||||| |||   | |||| ||||||| | |||||||||||| |||||    
T  45759755 aatgttcaaaaagaataaagagtggaagactcattgaaactactaatgagaggtgaagagggagaaatagttaaagac 45759678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 21916039 - 21916071
Alignment:
Q  213 atattaaatttattggaaagataaaatgtgtgt 245  Q
    ||||||||||||||||||||||||| |||||||    
T  21916039 atattaaatttattggaaagataaagtgtgtgt 21916071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 661 - 737
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgt 241  Q
    ||||||||||||| ||||||||||||||||| || ||  |||||||| |||||||||||||||||||||||||||||    
T  661 taggaatttgttggagaaagagagtagtaacaaaaaattgtttgttacatattaaatttattggaaagataaaatgt 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 4959206 - 4959089
Alignment:
Q  127 ttgtttgttatgacataaagataaaacgtgcnnnnnnntaggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttatt 226  Q
    ||||||||||||| | |||||||||||| ||       ||||||||||||| |||||||||||||||||||| ||   ||||||| |||||||||||| |    
T  4959206 ttgtttgttatgagagaaagataaaacgcgcaaaaaaataggaatttgttggagaaagagagtagtaactaataattatttgttacatattaaatttaat 4959107  T
Q  227 ggaaagataaaatgtgtg 244  Q
    ||||||||||| ||||||    
T  4959106 ggaaagataaagtgtgtg 4959089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 25965440 - 25965360
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtgt 245  Q
    ||||| ||| ||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| |||||||    
T  25965440 taggattttattggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtgt 25965360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 12412896 - 12412973
Alignment:
Q  167 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |  |||||||||||||||||||||||| ||||||    
T  12412896 ggaatttgttggagaaagagagtagtaactaacaattgtttgtcacgtattaaatttattggaaagataaagtgtgtg 12412973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 12424956 - 12425033
Alignment:
Q  167 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |  |||||||||||||||||||||||| ||||||    
T  12424956 ggaatttgttggagaaagagagtagtaactaacaattgtttgtcacgtattaaatttattggaaagataaagtgtgtg 12425033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 41541312 - 41541392
Alignment:
Q  11 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||| ||||| ||||||||||| |||||||||||||||   |||||| ||||||||| ||||||||||||||||||||||    
T  41541312 atgttcaaaagaaagaaagagtgtaagactcattggaacgactgatgagaggtgaaaagggagaaatagttgaagactcat 41541392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 20171267 - 20171192
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagtt 81  Q
    |||||||||| |||||||||||||||||||||||||||||||||   |||| | ||||||||| ||||||||||||    
T  20171267 catgaatgttcaaaaggaagaaagagtggaagactcattggaacgactgataagaggtgaaaagggagaaatagtt 20171192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 27746920 - 27746995
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||| ||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||| ||||| ||||||    
T  27746920 aatttattggagaaagagagtagtaactaacaattgtttgttaaatattaaatttattggaaaaataaagtgtgtg 27746995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 34424566 - 34424488
Alignment:
Q  166 aggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    |||||||||| |  |||| |||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  34424566 aggaatttgtcggggaaatagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtgtg 34424488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 16806470 - 16806381
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||||||  |||||||| || |||| | |||| |||||||||||||||||    
T  16806470 acttcgtgaatgttcaaaaggaagaaaaagtggaagactcgttggaattgttgatgagagatgaagagggagcaatagttgaagactcat 16806381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 16845751 - 16845662
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||| |||||||| |||||||||||| |||||||||||| ||||||  |||||||| || |||| | |||| |||||||||||||||||    
T  16845751 acttcgtgaatgttcaaaaggaagaaaaagtggaagactcgttggaattgttgatgagagatgaagagggagcaatagttgaagactcat 16845662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 45273250 - 45273165
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||| |||||||||||| | |||||||||||||||||  |||||||| | || || |||||| |||||||||||||||||    
T  45273250 catgaatgttcaaaaggaagaaaaaatggaagactcattggaagtgttgatgagatgtaaagatggagcaatagttgaagactcat 45273165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 7485868 - 7485813
Alignment:
Q  182 aagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaa 237  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||    
T  7485868 aagagagtagtaactaacaattgtttgttacatactaaatttattgcaaagataaa 7485813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 7486141 - 7486062
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaag 85  Q
    |||||||||| ||| | |||||||||||||||||||||| |||| |||||||  ||||||| |  |||||| ||||||||    
T  7486141 catgaatgttcaaacgaaagaaagagtggaagactcattagaactgttgatgggaggtgaagagtgagaaagagttgaag 7486062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 33024511 - 33024598
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 89  Q
    |||||||  ||||| ||||||||||||||||||||| ||||||||||| | ||||   ||||||| |  || ||||||||||||||||    
T  33024511 acttcatatatgttcaaaaggaagaaagagtggaaggctcattggaacggctgattggaggtgaagagagacaaatagttgaagactc 33024598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 21252844 - 21252918
Alignment:
Q  17 aaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||| |||||| ||| |||||||| ||||||  | |||||| ||||||| |||||| |||||||||||||||||    
T  21252844 aaaagaaagaaaaagttgaagactcgttggaattgctgatgagaggtgaagatggagcaatagttgaagactcat 21252918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 4316914 - 4316950
Alignment:
Q  10 aatgtttaaaaggaagaaagagtggaagactcattgg 46  Q
    |||||| ||||||||||||||||||||||||||||||    
T  4316914 aatgttcaaaaggaagaaagagtggaagactcattgg 4316950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 15507714 - 15507797
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 89  Q
    |||||||||| |||||||||||||| || ||||||||||| ||| | |||||  |  |||| | ||||||||||||||| ||||    
T  15507714 catgaatgttcaaaaggaagaaagaatgcaagactcattgaaacggctgatggaaaatgaagagggagaaatagttgaaaactc 15507797  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 25714191 - 25714148
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaac 49  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||    
T  25714191 catgaatgttcaaaaggaagaaagagtggaagaatcattagaac 25714148  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 36243854 - 36243811
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaac 49  Q
    |||||||||| |||||||| |||||||||||||| |||||||||    
T  36243854 catgaatgttcaaaaggaataaagagtggaagacacattggaac 36243811  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 249362 - 249279
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaa 84  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||  ||||||||| |||||| ||||||||    
T  249362 aacttcatgaatgttcaaaaggaagaaagagtggaagactcattggaactgctcatggaaggtgaaaagggagaagtagttgaa 249279  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 16365999 - 16366074
Alignment:
Q  167 ggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtg 242  Q
    ||||||| ||| |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  16365999 ggaatttcttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattggaaagataaagtgtg 16366074  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 20202119 - 20202194
Alignment:
Q  169 aatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||| ||||||    
T  20202119 aatttgttggagaaagagagtagtaactaacaattgtttgttacatattaaatttattgaaaagataaagtgtgtg 20202194  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 36059741 - 36059662
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| |||||| ||||||||||||||||  |||| ||| ||||||||||||||||||||||||| ||||||    
T  36059741 taggaatttgttggagaaagtgagtagtaactaacaattgtttcttacatattaaatttattggaaagataaagtgtgtg 36059662  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 17558249 - 17558328
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||| ||||| | ||||||||||| ||||| ||||||    
T  17558249 taggaatttgttggagaaagagagtagtaactaacaattgtttgttaaatatttagtttattggaaatataaagtgtgtg 17558328  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 8544575 - 8544489
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 88  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| ||| | |||||| ||||||| |  || |||||||||||||||    
T  8544575 acttcatgaatgttcaaaaggaagaaagagtggaagactcgttgaaactgctgatgagaggtgaagagagataaatagttgaagact 8544489  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 39585690 - 39585612
Alignment:
Q  10 aatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 88  Q
    |||||| |||||||||||| |||||||||||||||| ||| | |||||| ||||||| | |||| ||||||||||||||    
T  39585690 aatgttcaaaaggaagaaaaagtggaagactcattgaaactgctgatgaaaggtgaagagggagcaatagttgaagact 39585612  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 36437185 - 36437096
Alignment:
Q  2 acttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    ||||||||||| || |||||||||||| |||||||| ||| ||||||  | |||||| ||||||| ||| || |||||||||||||||||    
T  36437185 acttcatgaattttcaaaaggaagaaaaagtggaaggctcgttggaattgctgatgagaggtgaagatgaagcaatagttgaagactcat 36437096  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 17201657 - 17201741
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||||||| | |||||| |||||||||||| ||| ||  |||||||| ||||||| |  ||| |||||||||||||||||    
T  17201657 catgaatgtttaaa-gaaagaaaaagtggaagactcgttgaaattgttgatgagaggtgaagagagagcaatagttgaagactcat 17201741  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 28620304 - 28620389
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||||||||||| ||| || ||| ||| |||| ||||||| |||||||| ||||||| |  |||||||| ||||| ||||||    
T  28620304 catgaatgtttaaaagaaagtaaaagtagaatactcgttggaactgttgatgagaggtgaagagagagaaataattgaaaactcat 28620389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 32717791 - 32717715
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtg 242  Q
    |||||||||||||| ||||||||||||||||||||||  ||| |||| |||| ||||||||  |||| ||||| ||||    
T  32717791 taggaatttgttga-gaaagagagtagtaactaacaattgttagttacatatcaaatttatcagaaaaataaagtgtg 32717715  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43346514 - 43346429
Alignment:
Q  1 aacttcatgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaaga 86  Q
    |||| |||||||||| |||| ||| ||||||||||||||||||| |||| | |||||  ||||||| |  ||||| ||||||||||    
T  43346514 aactccatgaatgttcaaaaagaaaaaagagtggaagactcattagaactgctgatggaaggtgaagagagagaagtagttgaaga 43346429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 12436567 - 12436484
Alignment:
Q  8 tgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactcat 91  Q
    |||||||| |||||||| ||| ||||||| |||| || |||  |||||||| ||||||| | |||| ||| |||||||||||||    
T  12436567 tgaatgttcaaaaggaataaaaagtggaacactcgttagaattgttgatgagaggtgaagagggagcaatggttgaagactcat 12436484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 14655282 - 14655335
Alignment:
Q  190 agtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||| ||||||    
T  14655282 agtaactaacaattgtttgttacatattaaa-ttattggaaagataaagtgtgtg 14655335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 17200330 - 17200407
Alignment:
Q  11 atgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagactc 89  Q
    ||||| |||||||||||| ||||||||| | ||||||||   |||||  ||||||| | ||||||||||||||||||||    
T  17200330 atgttcaaaaggaagaaatagtggaagattaattggaacgactgatg-gaggtgaagaaggagaaatagttgaagactc 17200407  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 32474449 - 32474521
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaata 78  Q
    |||||||||| |||||||||||| |||| ||||||| || |||| || ||||| || |||| | |||||||||    
T  32474449 catgaatgttcaaaaggaagaaaaagtgaaagactcgttagaactgtggatgagagatgaagagggagaaata 32474521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 256995 - 257077
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaaccgttgatgataggtgaaaatggagaaatagttgaagact 88  Q
    |||||||||| |||| ||||||| |||||||||||  ||||||  |||||||| ||||||| | |||| ||||||||||||||    
T  256995 catgaatgttcaaaaagaagaaacagtggaagacttgttggaattgttgatgagaggtgaagagggagcaatagttgaagact 257077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 272038 - 271973
Alignment:
Q  179 agaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||| |||||||||||||| ||  |||||||| ||||||||||||||| ||||||||| ||||||    
T  272038 agaaaaagagtagtaactaataattgtttgttacatattaaatttattgaaaagataaagtgtgtg 271973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 48674 - 48596
Alignment:
Q  165 taggaatttgttgaagaaagagagtagtaactaacaaccgtttgttagatattaaatttattggaaagataaaatgtgtg 244  Q
    ||||||||||||||| ||| |||||||||||||| ||  |||||||| ||||||||||||||| ||| ||| | ||||||    
T  48674 taggaatttgttgaaaaaa-agagtagtaactaaaaattgtttgttacatattaaatttattgaaaaaatatagtgtgtg 48596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 4515 - 4472
Alignment:
Q  6 catgaatgtttaaaaggaagaaagagtggaagactcattggaac 49  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||    
T  4515 catgaatgttcaaaaggaagaaagagtggaagaatcattagaac 4472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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