View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_15 (Length: 400)
Name: NF15415_low_15
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 21243168 - 21242787
Alignment:
| Q |
1 |
ctcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatacttct |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243168 |
ctcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatacttct |
21243069 |
T |
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| Q |
101 |
caatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaaacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243068 |
caatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaaacac |
21242969 |
T |
|
| Q |
201 |
atgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaagttcttgtgt |
300 |
Q |
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| T |
21242968 |
atgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacgacgctgcgatgaagttcttgtgt |
21242869 |
T |
|
| Q |
301 |
gtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgtttt |
382 |
Q |
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| T |
21242868 |
gtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgtttt |
21242787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 21258933 - 21258587
Alignment:
| Q |
1 |
ctcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttatacttct |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||| | |||||| ||||||| | |
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| T |
21258933 |
ctcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctatactttt |
21258834 |
T |
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| Q |
101 |
caatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatccaaacac |
200 |
Q |
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|||||||||||||||| |||||||||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
21258833 |
caatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatctaaacac |
21258735 |
T |
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| Q |
201 |
atgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaagttcttgtgt |
300 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||| |
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| T |
21258734 |
atgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgcgatgaagttcttgtgg |
21258638 |
T |
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| Q |
301 |
gtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagt |
351 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21258637 |
gtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt |
21258587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 74 - 382
Target Start/End: Complemental strand, 21254357 - 21254047
Alignment:
| Q |
74 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
173 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
|
| Q |
174 |
gtatgttataaccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatc |
270 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatc |
21254159 |
T |
|
| Q |
271 |
atcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtt |
370 |
Q |
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|| |||| | || |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||| | |||| |
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| T |
21254158 |
attaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgtatcgctttgtt |
21254059 |
T |
|
| Q |
371 |
tcacatcgtttt |
382 |
Q |
| |
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|||||||||||| |
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| T |
21254058 |
tcacatcgtttt |
21254047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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