View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_17 (Length: 383)
Name: NF15415_low_17
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 8695862 - 8695495
Alignment:
| Q |
1 |
agaacttccaagaagccatgaaaatctttaatcatactttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgca |
100 |
Q |
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| T |
8695862 |
agaacttccaagaagccatgaaaatctttaatcatactttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgca |
8695763 |
T |
|
| Q |
101 |
tcgttatttattaagtgcaatattgatgtatgaatgtaagattaactccattactatctatgttaaaagtaatatttatgctacatatattttgttgttg |
200 |
Q |
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| T |
8695762 |
acgttatttattaagtgcaatattgatgtatgaatgtaagattaactccattactatctatgttaacagtaatatttatgctacctatattttgttgttg |
8695663 |
T |
|
| Q |
201 |
agtatttcgttggttggtaatggttaaataatttgaagatcgtgtgtttggtagcggggttttaggtggttatgagtggtaatccagtaaggccacatta |
300 |
Q |
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| T |
8695662 |
agtatttcgttggttggtaatggttaaataatttgaagaccgtgtgtttggtagcggggttttaggtggttatgagtggtaatctagtaaggccacatta |
8695563 |
T |
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| Q |
301 |
atagaggatctaggtgaggtgacacattctaaaaagagcatggttgtatatcacaaaagttgcatatt |
368 |
Q |
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| T |
8695562 |
atagaggatctaggtgaggtgacacattctaaaaagagcatggttgtatatcataaaagttgcatatt |
8695495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 8693407 - 8693520
Alignment:
| Q |
1 |
agaacttccaagaagccatgaaaatctttaa-tcatacttt---ttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttt |
96 |
Q |
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| T |
8693407 |
agaacttcgaagaagccatgaaaaactttaaatcataccttattttgtcaccccttgtttgttcatgtatatgatacat-gttttttctttgggtggttt |
8693505 |
T |
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| Q |
97 |
tgcatcgttatttat |
111 |
Q |
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| T |
8693506 |
tacatcgttatttat |
8693520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 8675184 - 8675349
Alignment:
| Q |
9 |
caagaagccatgaaaatcttt--aatcat-act--ttttgtcaccctttgtttgtccatgtatatg--atacatggttttttctttgggtggttttgcat |
101 |
Q |
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|||||||||||||||| |||| |||||| ||| |||| |||||| ||||||||||||||||||| |||||| |||||||||| |||||||||| ||| |
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| T |
8675184 |
caagaagccatgaaaaacttttaaatcataacttattttatcaccccttgtttgtccatgtatatgatatacat-gttttttcttcgggtggttttacat |
8675282 |
T |
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| Q |
102 |
cgttatttattaagtgcaatattgatg--tatgaatgtaagattaactccattactatctatgttaa |
166 |
Q |
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| T |
8675283 |
agttctttatctagtttaatattgatgtatatgaatgtatgattaacttcattattatttatgttaa |
8675349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 8687285 - 8687182
Alignment:
| Q |
9 |
caagaagccatgaaaatctt-taatcatac---tttttgtcaccctttgtttgtccatgtatatgatacatggttttttctttgggtggttttgcatcgt |
104 |
Q |
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|||||||||||||||| ||| |||||||| |||| |||||| |||||||||||||||||| | |||| ||||||||||||||||||||| ||| || |
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| T |
8687285 |
caagaagccatgaaaaacttgaaatcataccttattttatcaccccttgtttgtccatgtatat-acacat-gttttttctttgggtggttttacatagt |
8687188 |
T |
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| Q |
105 |
tattta |
110 |
Q |
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|||||| |
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| T |
8687187 |
tattta |
8687182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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