View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_18 (Length: 381)
Name: NF15415_low_18
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 101 - 368
Target Start/End: Complemental strand, 2656300 - 2656033
Alignment:
| Q |
101 |
tttatgctgaatgataaactgttgctgttcaattttactcacccttgcnnnnnnnnnnctaatagtataattataggactctggaattattgatgggaca |
200 |
Q |
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| T |
2656300 |
tttatgctgaatgataaactgttgctgttcaattttactcacccttgcaaaaaaaaaactaatagtataattataggactctggaattattgatgggaca |
2656201 |
T |
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| Q |
201 |
agagttggatctcaatgacaagtctactgtgattctcagtcccaattctgttcttctatctcatcaaaactgtttgaatgtgaagaaggagaaatcatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2656200 |
agagttggatctcaatgacaagtctactgtgattctcagtcccaattctgttcttccatctcatcaaaactgtttgaatgtgaagaaggagaaatcatgt |
2656101 |
T |
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| Q |
301 |
agatctcatagactagaagagaatatagaaactagaagaggttccatttatctgagtccaaatcagaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2656100 |
agatctcatagactagaagagaatatagaaactagaagaggttccatttatctgagtccaaatcagaa |
2656033 |
T |
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