View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_20 (Length: 372)
Name: NF15415_low_20
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 414607 - 414953
Alignment:
| Q |
1 |
tcttcttttttcatactactggtttatgatttctctttctcagtgcatttagaactgttatgattttaagactatgttgtttcccgactcatgcatgact |
100 |
Q |
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| T |
414607 |
tcttcttgtttcatactactggtttatgatttctctttctcagtgcacttagaactgttatgattttaagactatgttgtttcccgactcatgcatgact |
414706 |
T |
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| Q |
101 |
tgaacacttacttgtggaaatttggtcgtaaatgtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacat |
200 |
Q |
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| T |
414707 |
tgaacacttacttgtggaaatttggtcgtaaatgtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacat |
414806 |
T |
|
| Q |
201 |
ttgcttgaatgatgggcatgattgatcattaaaaatgtttgcaagagatgattggtatatttatttaaacaaattaaccattgtgttataggagtcccac |
300 |
Q |
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| T |
414807 |
ttgcttaaatgatgggcatgattgatcattaaaaatgtttgcatgagatgattggtatatttatttaaacaaattaaccattgtgttataggagtcccac |
414906 |
T |
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| Q |
301 |
tcttcctcgaaggtatgt-ggaaaattaaatctatgcagaataaagt |
346 |
Q |
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| T |
414907 |
tcttcctcgaaggtatgtgggaaaattaaatctatgcagaataaagt |
414953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 7527208 - 7527118
Alignment:
| Q |
219 |
tgattgatcattaaaaatgtttgcaagagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
308 |
Q |
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| T |
7527208 |
tgattgatcattaataatgtttgcatgaggtgtgtggtatatttatttaaaacaaattaaccatgatgttataggagtatcactcttcctc |
7527118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 37202146 - 37201987
Alignment:
| Q |
134 |
gtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgtgccttatacatttgcttgaatgatgggcatgattgatcattaaa |
233 |
Q |
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| T |
37202146 |
gtgtaagattatagccaagtatttatgcatagtgatttgaatttccatatgaatg-gccttatagatttgtttatttgatgacc-tggttgatcattaaa |
37202049 |
T |
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| Q |
234 |
aatgtttgcaagagatgattggtatatttattt--aaacaaattaaccattgtgttatagga |
293 |
Q |
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| T |
37202048 |
aatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgttatagga |
37201987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 37211559 - 37211445
Alignment:
| Q |
90 |
catgcatgacttgaacacttacttgtggaaatttggtcgtaaatgtgtaagattataacaaagtatttatgcatggtgatttgaatcttcatatgaatgt |
189 |
Q |
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| T |
37211559 |
catgcgtgacttgaacaattactcgtggaa-tttggtggcaaa-gtgtaagattatggcgaagtatttatgcatggtgatttgaatttccatatgaatgt |
37211462 |
T |
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| Q |
190 |
gccttatacatttgctt |
206 |
Q |
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| T |
37211461 |
gccttatagatttgctt |
37211445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 37183068 - 37182988
Alignment:
| Q |
229 |
ttaaaaatgtttgcaagagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
308 |
Q |
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| T |
37183068 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctc |
37182988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 37194200 - 37194120
Alignment:
| Q |
229 |
ttaaaaatgtttgcaagagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
308 |
Q |
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| T |
37194200 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctc |
37194120 |
T |
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