View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15415_low_23 (Length: 314)

Name: NF15415_low_23
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15415_low_23
NF15415_low_23
[»] chr7 (3 HSPs)
chr7 (95-292)||(38824882-38825079)
chr7 (1-36)||(38824800-38824835)
chr7 (210-295)||(44754274-44754359)
[»] chr1 (3 HSPs)
chr1 (95-292)||(41710188-41710385)
chr1 (210-281)||(37759925-37759996)
chr1 (1-36)||(41710094-41710129)
[»] chr5 (3 HSPs)
chr5 (101-289)||(3515737-3515925)
chr5 (210-294)||(30642779-30642863)
chr5 (1-36)||(3515637-3515672)
[»] scaffold0275 (1 HSPs)
scaffold0275 (200-288)||(10346-10434)
[»] chr3 (3 HSPs)
chr3 (202-288)||(46794932-46795018)
chr3 (210-286)||(35182620-35182696)
chr3 (210-286)||(24174557-24174633)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 95 - 292
Target Start/End: Original strand, 38824882 - 38825079
Alignment:
Q  95 gcatttcaattccctcacattagtgttccattctactttttaaaaatccatgtattcaagttgatgagccgtacaagttgcaggtaaaaaagacaatacg 194  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38824882 gcattccaattccctcaaattagtgttccattctactttttaaaaatccatgtactcaagttgatgagccgtacaagttgcaggtaaaaaagacaatacg 38824981  T
Q  195 atctcaaccatcctcattattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgtggcc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  38824982 atctcaaccatcctcattattttatattaaatcaatgattcaatttagatgagtctaagatggggaagttttacaattgccccatgctaaacgtggcc 38825079  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38824800 - 38824835
Alignment:
Q  1 tttgttatggtcgtgggcaaaggaaattacatttat 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  38824800 tttgttatagtcgtgggcaaaggaaattacatttat 38824835  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 44754274 - 44754359
Alignment:
Q  210 attattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgtggccttc 295  Q
    ||||||||||||| |||||| | |||||| || ||||||||||  || |||| |||| ||||| |||||||| |||| | ||||||    
T  44754274 attattttatatttaatcaacggttcaatctagatgagcctaaattgaggaaattttgcaattaccccatgctaaacattgccttc 44754359  T

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Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 95 - 292
Target Start/End: Original strand, 41710188 - 41710385
Alignment:
Q  95 gcatttcaattccctcacattagtgttccattctactttttaaaaatccatgtattcaagttgatgagccgtacaagttgcaggtaaaaaagacaatacg 194  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  41710188 gcattccaattccctcaaattagtgttccattctactttttaaaaatccatgtactcaagttgatgagccgtataagttgcaggtaaaaaagacaatacg 41710287  T
Q  195 atctcaaccatcctcattattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgtggcc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  41710288 atctcaaccatcctcattattttatattaaatcaatgattcaatttagatgagcctaagatggagaagttttacaattgccccatgctaaacgtggcc 41710385  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 37759996 - 37759925
Alignment:
Q  210 attattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgc 281  Q
    ||||||||||||| |||||| | |||||| || ||||||||||| ||||||| |||| ||||||||||||||    
T  37759996 attattttatatttaatcaacggttcaatctagatgagcctaagttggggaaattttgcaattgccccatgc 37759925  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41710094 - 41710129
Alignment:
Q  1 tttgttatggtcgtgggcaaaggaaattacatttat 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  41710094 tttgttatagtcgtgggcaaaggaaattacatttat 41710129  T

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Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 101 - 289
Target Start/End: Original strand, 3515737 - 3515925
Alignment:
Q  101 caattccctcacattagtgttccattctactttttaaaaatccatgtattcaagttgatgagccgtacaagttgcaggtaaaaaagacaatacgatctca 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3515737 caattccctcaaattagtgttccattctactttttaaaaatccatgtacttaagttgatgagccgtacaagttgcaggtaaaaaagacaatacgatctca 3515836  T
Q  201 accatcctcattattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgtg 289  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||||||    
T  3515837 accatcctcattattttgtattaaatcaatgattcaatttagataagcctaagatggggaagttttacaattaccccatgctaaacgtg 3515925  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 30642779 - 30642863
Alignment:
Q  210 attattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgtggcctt 294  Q
    |||| |||||||||||||| || || | |||| ||||||||||||||||||| |||||||||| |||||||| |||||| |||||    
T  30642779 attaatttatattaaatcagtggttgagtttagatgagcctaagatggggaaattttacaatttccccatgctaaacgtcgcctt 30642863  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3515637 - 3515672
Alignment:
Q  1 tttgttatggtcgtgggcaaaggaaattacatttat 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  3515637 tttgttatagtcgtgggcaaaggaaattacatttat 3515672  T

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Target: scaffold0275 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 10346 - 10434
Alignment:
Q  200 aaccatcctcattattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgt 288  Q
    ||||||||  |||| |||||||||||||| || || | |||| ||||||||||||||||||| |||||||||| |||||||| ||||||    
T  10346 aaccatccctattaatttatattaaatcagtggttgagtttagatgagcctaagatggggaaattttacaatttccccatgctaaacgt 10434  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 46795018 - 46794932
Alignment:
Q  202 ccatcctcattattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaacgt 288  Q
    ||||||| |||| |||||||||||||| || || | |||| |||||||||||||||| || |||||||||| |||||||| ||||||    
T  46795018 ccatccttattaatttatattaaatcagtggttgagtttagatgagcctaagatgggaaaattttacaatttccccatgctaaacgt 46794932  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 35182620 - 35182696
Alignment:
Q  210 attattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaac 286  Q
    ||||||||||||| |||||| | ||||||||| ||||||||||| ||| ||| |||| |||||||||||||| ||||    
T  35182620 attattttatatttaatcaacggttcaatttagatgagcctaagttggagaaattttgcaattgccccatgctaaac 35182696  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 24174633 - 24174557
Alignment:
Q  210 attattttatattaaatcaatgattcaatttaaatgagcctaagatggggaagttttacaattgccccatgccaaac 286  Q
    ||||||||||||| |||||| | |||||| || |||| |||||| ||||||| |||| |||||||||||||| ||||    
T  24174633 attattttatatttaatcaacggttcaatctagatgaacctaagttggggaaattttgcaattgccccatgctaaac 24174557  T

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