View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_24 (Length: 314)
Name: NF15415_low_24
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 71 - 314
Target Start/End: Complemental strand, 33702284 - 33702035
Alignment:
| Q |
71 |
aggttttggtggtgatagactagtgttgctgtgttaaacattaatgactaactcaaaactaatgaaataagnnnnnnnnnnn------gtaaatctgata |
164 |
Q |
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| T |
33702284 |
aggttttggtggtgatagactagtgttgctgtgttaaacattaatgactaactgaaaactaatgaattaagtttttttttttttttttgtaaatctgata |
33702185 |
T |
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| Q |
165 |
ctatattccttatgactttgaataatggcatgccttgaagtgcaaggctgtctagtaatgtgacatgtattccaattgttcaagctatgataatatcagg |
264 |
Q |
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| T |
33702184 |
ctatattccttatgactttgaataatgtcatgccttgaagtgcaaggctgtctagtaatgtgacatgtattccaattgttcaagctatgataatatcagg |
33702085 |
T |
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| Q |
265 |
ttattagcaaatctatctaatgtaacttgttctgttaacttgagggattt |
314 |
Q |
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| T |
33702084 |
ttattagcaagtctatctaatgtaacttgttctgttaacttgagggattt |
33702035 |
T |
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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 27510157 - 27510107
Alignment:
| Q |
69 |
ttaggttttggtggtgatagactagtgttgctgtgttaaacattaatgact |
119 |
Q |
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| T |
27510157 |
ttaggttttgatggtgatagactagtgttgctgtgttaaacattaatgact |
27510107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 27511035 - 27510969
Alignment:
| Q |
51 |
tttttagtgcaaatgaattta---ggttttggtggtgatagactagtgttgctgtgttaaacattaa |
114 |
Q |
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| T |
27511035 |
tttttagtgcaaatgaatttattaggttttgatggtgatagactggtgttgctgtgttaaatattaa |
27510969 |
T |
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