View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15415_low_25 (Length: 303)
Name: NF15415_low_25
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 3866203 - 3865914
Alignment:
| Q |
1 |
attgctttgttttttctgtgttggccatgtgcccaaattgtctcataaatatttcctaacactttttgagnnnnnnnnattgaaggtcaaacctagggca |
100 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||||||| ||||||||||||| ||||| || |||| |||||||||||||||||||||| |
|
|
| T |
3866203 |
attgatttgatttttctgtgttggccatgtgctcaaattgtttcataaatatttcgtaacatttgttga-ttttttttattgaaggtcaaacctagggca |
3866105 |
T |
|
| Q |
101 |
acccgagataatggaaggacattctcggaaacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaagcatagatttcttcaagataacagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
3866104 |
acccgagataatggaaggacattctcggaaacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaaacatagatttattcaagataacagg |
3866005 |
T |
|
| Q |
201 |
agggataagtatgatgattttctgaaagtcttgaaggattataagacaaaaaggtttgatcatgtattaccattattttgtttattatatt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
3866004 |
agggataagtatgatgattttctgaaagtcttgaaggattacaagacaaaaaggtttgatcatgtcttaccactattttgtttattatatt |
3865914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 130 - 291
Target Start/End: Complemental strand, 3865341 - 3865181
Alignment:
| Q |
130 |
aacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaagcatagatttcttcaagataacaggagggataagtatgatgattttctgaaagt |
229 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| | ||||||||||| ||||||| |||||| ||| |||||| ||| ||||| | |||||||| || |
|
|
| T |
3865341 |
aacattgtgaagcaaaaaatgccaaagaatttttgaatgaagttaaatgtagatttattcaagttaatcagagggaaaagaatgataactttctgaatgt |
3865242 |
T |
|
| Q |
230 |
cttgaaggattataagacaaaaaggtttgatcatgtattaccattattttgtttattatatt |
291 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||| | | |||| |||||| ||||||||||| |
|
|
| T |
3865241 |
cttgaaggattacaggacacaaaggtttgatcatttgtgaccactatttt-tttattatatt |
3865181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 3865711 - 3865580
Alignment:
| Q |
130 |
aacattgtgaagtcaaaaaggccaaagaatttcttaatgaagttaagcatagatttcttcaagataacaggagggataagtatgatgattttctgaaagt |
229 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||| | ||||| |||||| ||||||| |||||| ||| ||||||||||| |||| | ||| |||| || |
|
|
| T |
3865711 |
aacattctgaagaaaaaaatgccaaagaatttgtcaatgatgttaagtgtagatttattcaagttaatcagagggataagtgtgataactttttgaatgt |
3865612 |
T |
|
| Q |
230 |
cttgaaggattataagacaaaaaggtttgatc |
261 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||| |
|
|
| T |
3865611 |
cttgaatgattacaagacacaaaggtttgatc |
3865580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 32234283 - 32234198
Alignment:
| Q |
155 |
agaatttcttaatgaagttaagcatagatttcttcaagataacaggagggataagtatgatgattttctgaaagtcttgaaggatt |
240 |
Q |
| |
|
||||||| | |||||||| ||| ||||||| |||||||||| | ||| |||||||||||| | ||| ||||||| |||||||||| |
|
|
| T |
32234283 |
agaatttgtcaatgaagtaaagtgtagatttattcaagataatacgagagataagtatgatcactttttgaaagtgttgaaggatt |
32234198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University