View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_27 (Length: 279)
Name: NF15415_low_27
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 1515102 - 1514850
Alignment:
| Q |
18 |
agtatatgaaagtgtgtgcttcaaccaagcatgatagcttccatatatatagtggatggatgatacttttaggattcccctnnnnnnnnntacttctaag |
117 |
Q |
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| T |
1515102 |
agtatatgaaagtgtgtgcttcaaccaagcatgttagcttccatatatatagtggatggatgatacttttaggattcccctaaaaaaaaatacttctaag |
1515003 |
T |
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| Q |
118 |
attgtccactaggaccacaaaatgcaccattttttctctcatagaactccctctttttagagcactaataatttatcatccaaaaagcttaccaaaccta |
217 |
Q |
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| T |
1515002 |
attgtccactaggaccacaaaatgcaccattttttctctcatagaactccctctttttagagcactaataatttatcatccaaaaagcttaccaaaccta |
1514903 |
T |
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| Q |
218 |
acaccaaaaatcattgagtaggtcacttctaacatttcaccatccaaattgtg |
270 |
Q |
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| T |
1514902 |
acaccaaaaatcattgagtaggtcacttctaacatttcgccatccaaattgtg |
1514850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 40445903 - 40445947
Alignment:
| Q |
30 |
tgtgtgcttcaaccaagcatgatagcttccatatatatagtggat |
74 |
Q |
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| T |
40445903 |
tgtgtgcttcaaccaagcttgttagcttccatatatatagtggat |
40445947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 40446123 - 40446176
Alignment:
| Q |
167 |
cctctttttagagcactaataatttatcatccaaaaagcttaccaaacctaaca |
220 |
Q |
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| T |
40446123 |
cctctttttagtacactaataaattatcatccaaaaagtttaccaaaccaaaca |
40446176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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