View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_33 (Length: 245)
Name: NF15415_low_33
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1514582 - 1514341
Alignment:
| Q |
1 |
ttttattagtaaattaatgatcannnnnnngaattactgaattatttgtaaacatttgtactttaaaatgatataggaaaatattatttcactggttata |
100 |
Q |
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| T |
1514582 |
ttttattaataaattaatgatcatttttttgaattactcaattatttataaacatttgtactttaaaatgatataggagtgtattatttcactggttata |
1514483 |
T |
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| Q |
101 |
agcaatatattaatttctaattcnnnnnnnnnaaaagatattcaagattcactattgctagcaataataaagttagaatattttgtacc----nnnnnnn |
196 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1514482 |
agcaatatattaatttctaattcttttttcttaaaagatattcaagattcactattgtaagcaataataaagttagaatattttgtacccaaaaaaataa |
1514383 |
T |
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| Q |
197 |
taaataaagttagaatattttaaatgctatttcgttgatatt |
238 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1514382 |
aaaataaagttagaatattttaaatgctatttcgttgatatt |
1514341 |
T |
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