View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15415_low_34 (Length: 242)

Name: NF15415_low_34
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15415_low_34
NF15415_low_34
[»] chr6 (19 HSPs)
chr6 (40-174)||(8626625-8626759)
chr6 (40-174)||(13757350-13757484)
chr6 (40-174)||(1605721-1605855)
chr6 (40-174)||(4129570-4129703)
chr6 (40-174)||(15064695-15064829)
chr6 (40-174)||(7761443-7761577)
chr6 (40-174)||(29260335-29260469)
chr6 (40-174)||(31559738-31559872)
chr6 (41-174)||(17942587-17942720)
chr6 (41-167)||(8235769-8235895)
chr6 (40-174)||(30734483-30734617)
chr6 (40-174)||(20398238-20398372)
chr6 (45-174)||(3798247-3798376)
chr6 (190-242)||(1222819-1222871)
chr6 (40-164)||(26860907-26861031)
chr6 (105-174)||(19996322-19996391)
chr6 (66-174)||(1814762-1814870)
chr6 (136-174)||(15064933-15064971)
chr6 (50-119)||(847831-847900)
[»] chr4 (26 HSPs)
chr4 (40-174)||(14261187-14261321)
chr4 (40-174)||(24706247-24706381)
chr4 (40-174)||(44568980-44569114)
chr4 (41-174)||(21310565-21310698)
chr4 (40-174)||(12071703-12071837)
chr4 (40-174)||(22321268-22321402)
chr4 (41-174)||(25704795-25704928)
chr4 (41-174)||(40122487-40122620)
chr4 (40-172)||(21661537-21661669)
chr4 (40-172)||(21670301-21670433)
chr4 (41-164)||(50768006-50768129)
chr4 (40-174)||(20249014-20249148)
chr4 (41-173)||(21064905-21065037)
chr4 (40-174)||(19692865-19692999)
chr4 (40-174)||(19703450-19703584)
chr4 (40-158)||(31892375-31892493)
chr4 (40-164)||(18507276-18507400)
chr4 (80-174)||(50839031-50839125)
chr4 (40-167)||(6128956-6129083)
chr4 (40-129)||(34324627-34324717)
chr4 (45-174)||(32543627-32543756)
chr4 (43-145)||(48652370-48652472)
chr4 (210-242)||(47597449-47597481)
chr4 (190-241)||(4228480-4228531)
chr4 (139-174)||(39295418-39295453)
chr4 (138-174)||(34324618-34324654)
[»] chr3 (38 HSPs)
chr3 (40-174)||(36881423-36881557)
chr3 (40-174)||(46694110-46694244)
chr3 (40-174)||(13364986-13365120)
chr3 (43-174)||(29375278-29375409)
chr3 (40-174)||(23087931-23088065)
chr3 (40-174)||(3383219-3383353)
chr3 (40-174)||(19241668-19241802)
chr3 (40-174)||(198998-199132)
chr3 (41-174)||(13703356-13703489)
chr3 (40-159)||(43750279-43750398)
chr3 (40-174)||(18355868-18356002)
chr3 (40-174)||(32834989-32835123)
chr3 (65-174)||(48820508-48820617)
chr3 (40-151)||(31873886-31873996)
chr3 (41-163)||(48436368-48436490)
chr3 (40-168)||(48963262-48963390)
chr3 (41-163)||(54086696-54086818)
chr3 (89-174)||(26783661-26783746)
chr3 (80-168)||(6901744-6901831)
chr3 (41-119)||(52009105-52009183)
chr3 (46-164)||(27706999-27707116)
chr3 (40-133)||(37293554-37293644)
chr3 (40-165)||(24064366-24064488)
chr3 (105-174)||(19912146-19912215)
chr3 (112-174)||(38806320-38806382)
chr3 (43-137)||(53559648-53559742)
chr3 (105-174)||(12095395-12095464)
chr3 (105-174)||(44276775-44276844)
chr3 (190-242)||(46428864-46428916)
chr3 (190-242)||(54812087-54812139)
chr3 (80-139)||(1455186-1455245)
chr3 (43-110)||(37781082-37781149)
chr3 (40-98)||(46188909-46188967)
chr3 (41-98)||(40228280-40228337)
chr3 (190-239)||(42794797-42794846)
chr3 (209-242)||(43912110-43912143)
chr3 (46-119)||(52805082-52805155)
chr3 (142-174)||(37293437-37293469)
[»] chr1 (32 HSPs)
chr1 (40-174)||(23045279-23045413)
chr1 (40-174)||(40783657-40783791)
chr1 (41-174)||(321770-321903)
chr1 (40-174)||(284476-284610)
chr1 (40-174)||(47037852-47037986)
chr1 (43-174)||(23526385-23526516)
chr1 (40-168)||(27210961-27211089)
chr1 (40-174)||(24771906-24772040)
chr1 (40-174)||(33082887-33083021)
chr1 (40-169)||(46771781-46771910)
chr1 (43-167)||(40562293-40562416)
chr1 (40-139)||(40261320-40261419)
chr1 (40-174)||(51064754-51064888)
chr1 (40-174)||(31003787-31003921)
chr1 (40-174)||(18396837-18396971)
chr1 (40-174)||(27143014-27143146)
chr1 (41-137)||(40052501-40052597)
chr1 (43-169)||(14925610-14925734)
chr1 (40-174)||(34458724-34458858)
chr1 (42-167)||(23166858-23166983)
chr1 (50-167)||(24876714-24876831)
chr1 (43-167)||(31061463-31061590)
chr1 (47-167)||(25929248-25929368)
chr1 (80-138)||(1749457-1749515)
chr1 (40-174)||(1837827-1837962)
chr1 (190-242)||(22065040-22065092)
chr1 (40-105)||(3657217-3657282)
chr1 (105-174)||(3943735-3943804)
chr1 (105-174)||(41959781-41959850)
chr1 (83-138)||(14350510-14350565)
chr1 (136-174)||(51064995-51065033)
chr1 (117-174)||(9589615-9589672)
[»] chr8 (26 HSPs)
chr8 (40-174)||(7147056-7147190)
chr8 (40-174)||(40058303-40058437)
chr8 (40-174)||(40918731-40918865)
chr8 (40-174)||(30999524-30999658)
chr8 (40-174)||(43275399-43275533)
chr8 (12-174)||(36068195-36068357)
chr8 (40-174)||(2539930-2540064)
chr8 (40-174)||(11174223-11174357)
chr8 (40-174)||(11646325-11646459)
chr8 (40-174)||(37345714-37345848)
chr8 (40-174)||(3585594-3585728)
chr8 (40-174)||(27035138-27035272)
chr8 (43-159)||(20546308-20546424)
chr8 (41-156)||(27563885-27564000)
chr8 (40-174)||(35866756-35866890)
chr8 (40-174)||(28568061-28568195)
chr8 (40-174)||(28575654-28575788)
chr8 (40-168)||(26628822-26628950)
chr8 (80-174)||(28562604-28562698)
chr8 (42-174)||(45400770-45400902)
chr8 (40-138)||(13880991-13881089)
chr8 (61-145)||(10180897-10180981)
chr8 (190-242)||(44146012-44146064)
chr8 (105-174)||(41305762-41305831)
chr8 (211-241)||(38560478-38560508)
chr8 (105-174)||(45278013-45278081)
[»] chr5 (24 HSPs)
chr5 (40-174)||(12806853-12806987)
chr5 (40-174)||(40886610-40886744)
chr5 (12-174)||(30720492-30720654)
chr5 (40-174)||(36561099-36561233)
chr5 (43-174)||(25773795-25773926)
chr5 (40-174)||(10285058-10285191)
chr5 (40-174)||(25683229-25683363)
chr5 (41-174)||(23097724-23097857)
chr5 (42-174)||(37900623-37900755)
chr5 (41-172)||(16983401-16983532)
chr5 (41-174)||(734339-734472)
chr5 (40-168)||(39071025-39071153)
chr5 (41-167)||(11319700-11319826)
chr5 (41-174)||(1056625-1056756)
chr5 (40-163)||(16054254-16054377)
chr5 (85-174)||(26168096-26168185)
chr5 (61-155)||(30402981-30403075)
chr5 (82-143)||(11795314-11795375)
chr5 (40-102)||(7277495-7277557)
chr5 (190-242)||(18934361-18934413)
chr5 (45-119)||(11797694-11797768)
chr5 (105-174)||(15304822-15304891)
chr5 (209-239)||(4560174-4560204)
chr5 (60-101)||(12305687-12305728)
[»] chr2 (20 HSPs)
chr2 (41-174)||(22388138-22388271)
chr2 (40-174)||(23366932-23367066)
chr2 (40-174)||(3519050-3519184)
chr2 (40-174)||(39938313-39938447)
chr2 (41-174)||(1102645-1102778)
chr2 (40-174)||(1646430-1646564)
chr2 (41-174)||(37673743-37673876)
chr2 (40-174)||(12969740-12969874)
chr2 (61-174)||(40756911-40757024)
chr2 (41-174)||(39561895-39562023)
chr2 (49-174)||(28110095-28110220)
chr2 (41-168)||(37284525-37284650)
chr2 (80-171)||(36447441-36447532)
chr2 (40-137)||(19976471-19976568)
chr2 (40-144)||(34242117-34242221)
chr2 (81-139)||(32838964-32839022)
chr2 (41-110)||(28401399-28401468)
chr2 (190-242)||(17290337-17290389)
chr2 (44-167)||(4917908-4918031)
chr2 (86-145)||(14779964-14780023)
[»] chr7 (17 HSPs)
chr7 (40-174)||(27813954-27814088)
chr7 (40-174)||(36453124-36453258)
chr7 (40-174)||(10981651-10981785)
chr7 (40-174)||(25614353-25614487)
chr7 (40-174)||(47110593-47110727)
chr7 (40-174)||(40349105-40349238)
chr7 (40-174)||(16662236-16662370)
chr7 (40-174)||(17636596-17636730)
chr7 (45-145)||(27941013-27941113)
chr7 (41-139)||(3091657-3091755)
chr7 (41-139)||(24456800-24456898)
chr7 (190-242)||(24468808-24468860)
chr7 (190-242)||(24473756-24473808)
chr7 (80-174)||(16360560-16360653)
chr7 (41-116)||(8380082-8380157)
chr7 (105-168)||(25059456-25059519)
chr7 (105-174)||(2910859-2910928)
[»] scaffold1770 (1 HSPs)
scaffold1770 (40-174)||(305-438)
[»] scaffold0054 (1 HSPs)
scaffold0054 (40-174)||(45596-45730)
[»] scaffold0062 (1 HSPs)
scaffold0062 (40-154)||(287-401)
[»] scaffold0343 (1 HSPs)
scaffold0343 (41-164)||(6911-7033)
[»] scaffold0168 (1 HSPs)
scaffold0168 (40-174)||(7811-7945)
[»] scaffold0056 (1 HSPs)
scaffold0056 (40-164)||(71226-71350)
[»] scaffold0025 (1 HSPs)
scaffold0025 (61-140)||(65199-65278)
[»] scaffold0076 (1 HSPs)
scaffold0076 (41-146)||(15351-15456)
[»] scaffold0257 (1 HSPs)
scaffold0257 (105-174)||(23844-23913)
[»] scaffold1431 (1 HSPs)
scaffold1431 (40-72)||(1-33)
[»] scaffold0939 (1 HSPs)
scaffold0939 (80-140)||(1124-1184)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 8626625 - 8626759
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626625 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 8626724  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  8626725 ctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 13757350 - 13757484
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13757350 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 13757449  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||| ||||||    
T  13757450 ctaaaatggacaagtattatgaaacggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 1605721 - 1605855
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  1605721 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaatttgaaagtgacaagtattgtgaaacaaaattattct 1605820  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  1605821 ctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 4129570 - 4129703
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  4129570 ctctctctacaataaatatgcaagggtattattgacaagacaata-ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatttt 4129668  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  4129669 ctaaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 15064829 - 15064695
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  15064829 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaacttgaaagtgacaagtattatgaaacaaaattattct 15064730  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||||||||||||||||||||||||||||||    
T  15064729 ccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 7761443 - 7761577
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  7761443 ctctctctacaataaatatgcaagggtattattgacaaaataataattaatattgcattgaaacttgaaagtgacaaatattgtgaaacaaaattattct 7761542  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  7761543 ctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 29260335 - 29260469
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||    
T  29260335 ctctctctacaataaatatgtaagggtattattgacaagacagtaattaatgttgcattgaaacttgaaaatgacaagtattttgaaacaaaattattct 29260434  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  29260435 ctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 31559872 - 31559738
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||| ||| |||||||||||    
T  31559872 ctctctctacaataaatatgcaagggtattattaacaagacaataattaatgttgcattgaaacttgaaagtaacaagtattgtaaaataaaattattct 31559773  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||| ||||||||||||||||||||||||    
T  31559772 ctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 17942587 - 17942720
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  17942587 tctctctacaataaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattataaaacaaaattattctc 17942686  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
     |||||||||||||||||||||||||||||||||    
T  17942687 caaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 8235769 - 8235895
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8235769 tctctctacaataaatatgtaagggtattattgataagacaataattaatattgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 8235868  T
Q  141 taaaatggacaagtattatgaaacgga 167  Q
    |||||| ||||||||||||||||||||    
T  8235869 taaaatagacaagtattatgaaacgga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 30734617 - 30734483
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||| ||||||  ||||| |||||| ||||||||||||| |    
T  30734617 ctctctctacaataaatatgcaagggtattattgataagataataattaatgttgcattgaaatttgaaaatgacaactattgtaaaacaaaattatttt 30734518  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||||||||||||||||||| ||||| ||||    
T  30734517 ccaaaatggacaagtattatgaaaaggaggaagta 30734483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 20398372 - 20398238
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||| || |||||||| | ||||||||||||||| |   |||||||||||||||||| ||||||||||| | ||||||  |||||||||||||||| |    
T  20398372 ctctctgtataataaataggtaagggtattattgacaatttaataattaatgttgcattaaaacttgaaagtggcaagtaaagtgaaacaaaattatttt 20398273  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||  |||| ||||| ||||||| ||||||||    
T  20398272 ccaaaagtgacatgtattgtgaaacgaagggagta 20398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 3798247 - 3798376
Alignment:
Q  45 tctacaataaatatgcaagggtattattgactagaca-ataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaa 143  Q
    |||| |||||||| | |||||||||||||| || ||  ||||||||||||||||| ||||||||||| ||||||||  ||||||||||| |||| | |||    
T  3798247 tctataataaataggtaagggtattattga-taaactcataattaatgttgcattaaaacttgaaagtgacaagtaaagtgaaacaaaactattatttaa 3798345  T
Q  144 aatggacaagtattatgaaacggagggagta 174  Q
    ||  ||||  ||||||||| | |||||||||    
T  3798346 aaacgacatatattatgaagcagagggagta 3798376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 1222819 - 1222871
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  1222819 ggtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggac 1222871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 26860907 - 26861031
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||  |||||||| | || |||||||||||| |  ||||||| ||||||| |||||||| |||||  ||||||||  |||||||||| |||||||    
T  26860907 ctctctctgtaataaataggtaaaggtattattgacaaatcaataatcaatgttgtattgaaacatgaaaatgacaagtaaagtgaaacaaacttattct 26861006  T
Q  140 ctaaaatggacaagtattatgaaac 164  Q
    | ||||  |||| ||||| ||||||    
T  26861007 ccaaaaatgacatgtattgtgaaac 26861031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 19996391 - 19996322
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19996391 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 1814762 - 1814870
Alignment:
Q  66 tattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacg 165  Q
    |||||||||| |  ||||||| |||||||||||| || || |||| ||||||||  |||||| |||||||||||  ||||  |||| ||||| |||||||    
T  1814762 tattattgacaaaccaataatcaatgttgcattggaaattaaaagtgacaagtaaagtgaaataaaattattcttcaaaagtgacatgtattgtgaaacg 1814861  T
Q  166 gagggagta 174  Q
     ||| ||||    
T  1814862 aaggaagta 1814870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 15064933 - 15064971
Alignment:
Q  136 ttctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 847900 - 847831
Alignment:
Q  50 aataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagta 119  Q
    |||||||||  ||| ||||||||||| |  ||||||||||||||||||||||  ||||||  ||||||||    
T  847900 aataaatatttaagagtattattgacaaagcaataattaatgttgcattgaactttgaaaatgacaagta 847831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 14261187 - 14261321
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14261187 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 14261286  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  14261287 ctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 24706381 - 24706247
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706381 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 24706282  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  24706281 ctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 44568980 - 44569114
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44568980 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacatgaaagggacaagtattgtgaaacaaaattattct 44569079  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  44569080 ctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 21310565 - 21310698
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21310565 tctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 21310664  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||||||    
T  21310665 taaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 12071703 - 12071837
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12071703 ctctctctacaataaatatgcaagggtattattgacaagacaagaattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 12071802  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  12071803 ctaaaatggacaagtattatgaaacggagggagta 12071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 22321402 - 22321268
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22321402 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 22321303  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||| |||||||||||||||||||||||||||    
T  22321302 ctaaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 25704795 - 25704928
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  25704795 tctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcactgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 25704894  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||||||    
T  25704895 taaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 40122620 - 40122487
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40122620 tctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 40122521  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||| |||||    
T  40122520 taaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 21661669 - 21661537
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  21661669 ctctctctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgataaatattgtgaaacaaaattattct 21661570  T
Q  140 ctaaaatggacaagtattatgaaacggagggag 172  Q
    |||||||||||||||||||||||||||||||||    
T  21661569 ctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 21670433 - 21670301
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  21670433 ctctctctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgataaatattgtgaaacaaaattattct 21670334  T
Q  140 ctaaaatggacaagtattatgaaacggagggag 172  Q
    |||||||||||||||||||||||||||||||||    
T  21670333 ctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 50768006 - 50768129
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  50768006 tctctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaaatattgtgaaacaaaattattctc 50768105  T
Q  141 taaaatggacaagtattatgaaac 164  Q
    ||||||||||||||||||||||||    
T  50768106 taaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 20249148 - 20249014
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  20249148 ctctctctacaataaatatgtaagggtattattgacaagacaataattaatattgcattgaaacttgaaagagacaggtattgtgaaacaaaattattct 20249049  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||||||||||||||||||||||||| |||||    
T  20249048 ccaaaatggacaagtattatgaaacggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 21064905 - 21065037
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  21064905 tctctctacaataaatatgtaagagtattattgtcaagacaataattaatgttgcattgaaatttgaaagcgataagtattgtgaaacaaaattattctc 21065004  T
Q  141 taaaatggacaagtattatgaaacggagggagt 173  Q
    ||||||| |||||||||||||||||||||||||    
T  21065005 taaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 19692865 - 19692999
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | |||||| |||||||  |  ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  19692865 ctctctctacaataaataagtaagggtgttattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattct 19692964  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||| |||||||||| ||| ||||| ||||||    
T  19692965 ctaaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 19703450 - 19703584
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | |||||| |||||||  |  ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  19703450 ctctctctacaataaataagtaagggtgttattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattct 19703549  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||| |||||||||| ||| ||||| ||||||    
T  19703550 ctaaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 31892375 - 31892493
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||| | |||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||| |||| |||||||||||| |||||||||||||||    
T  31892375 ctctctttgcaataaatatgcaaggctattattgacaagacaataattaatgttacattaaaacttaaaagtgacaagtattgtaaaacaaaattattct 31892474  T
Q  140 ctaaaatggacaagtatta 158  Q
    | || || |||||||||||    
T  31892475 ccaagatagacaagtatta 31892493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 18507400 - 18507276
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||| |||||||| | |||  |||||||||| || ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||    
T  18507400 ctctctctataataaataagtaagaatattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagaaatgtgaaacaaaattatgct 18507301  T
Q  140 ctaaaatggacaagtattatgaaac 164  Q
    ||||||  |||||||||| ||||||    
T  18507300 ctaaaagcgacaagtattgtgaaac 18507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 50839125 - 50839031
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||  |||||||||| ||||| ||||||||||    
T  50839125 caataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaaaattattctccaaaagcgacaagtattgtgaaatggagggagta 50839031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 6129083 - 6128956
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||||||||   ||||||||||||||  |  ||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||    
T  6129083 ctctctctacaataaatagataagggtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattct 6128984  T
Q  140 ctaaaatggacaagtattatgaaacgga 167  Q
      ||||  |||| ||||| |||||||||    
T  6128983 tcaaaagcgacatgtattgtgaaacgga 6128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 34324717 - 34324627
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaact-tgaaagggacaagtattgtgaaaca 129  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | ||| ||||||||||| |||||||    
T  34324717 ctctctctacaataaatatgcaagggtattattgacaagaaaatcattaatgttgcattgaaactctaaaatggacaagtattatgaaaca 34324627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 32543627 - 32543756
Alignment:
Q  45 tctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaa 144  Q
    |||||||||||||   |||||||||| |||| |  ||||||||||||| ||||| |||||||||||  |||||||   ||||||||||||||||||||||    
T  32543627 tctacaataaatagataagggtattaatgacaaaccaataattaatgtcgcattaaaacttgaaagtaacaagtaaaatgaaacaaaattattctctaaa 32543726  T
Q  145 atggacaagtattatgaaacggagggagta 174  Q
    |  |||||||||| |||||| || ||||||    
T  32543727 agcgacaagtattgtgaaacagaaggagta 32543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 48652370 - 48652472
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    |||||||  |||||| | |||||||||||| |  |  ||||||||||||| ||||| |||||| ||||  |||||||  ||||||||||||||||||| |    
T  48652370 tctctacgttaaataggtaagggtattattaataaatcaataattaatgtcgcattaaaactttaaagtaacaagtaaagtgaaacaaaattattctcca 48652469  T
Q  143 aaa 145  Q
    |||    
T  48652470 aaa 48652472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 47597449 - 47597481
Alignment:
Q  210 ccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||||||||||||||||||||||    
T  47597449 ccaagagaaaagaaactacgaaattaaccggac 47597481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 4228531 - 4228480
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccgga 241  Q
    |||||||||||||  | ||| ||| |||||||||||||||||||||||||||    
T  4228531 ggtacaatagagggcaaagctcaaaagaaaagaaactacgaaattaaccgga 4228480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 39295418 - 39295453
Alignment:
Q  139 tctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39295418 tctaaaatggacaagtattatgaaacggaaggagta 39295453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 34324654 - 34324618
Alignment:
Q  138 ctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34324654 ctctaaaatggacaagtattatgaaacagatggagta 34324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 36881423 - 36881557
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881423 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 36881522  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  36881523 ctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 46694244 - 46694110
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46694244 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 46694145  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  46694144 ctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 13364986 - 13365120
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  13364986 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 13365085  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  13365086 ctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 29375278 - 29375409
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29375278 tctctacaataaatatgcaagggcattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctcta 29375377  T
Q  143 aaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||||    
T  29375378 aaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 23088065 - 23087931
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23088065 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 23087966  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     |||||| |||||||||||||||||||||| ||||    
T  23087965 ttaaaatcgacaagtattatgaaacggaggaagta 23087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 3383219 - 3383353
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3383219 ctctctctacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 3383318  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||| ||||| | ||||||    
T  3383319 ctaaaatggacaagtattataaaacgaaaggagta 3383353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 19241802 - 19241668
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  19241802 ctctctctacaataaacatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttaaaagtgacaagtattttgaaacaaaattattct 19241703  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  19241702 ctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 198998 - 199132
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| |    
T  198998 ctctctctacaataaatatgcaagggtattattgacaaaacaataattaatgttgcattgaaacttgaaaatgacaaatattgtgaaacaaaattatttt 199097  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||| |||||||||| ||||||||||    
T  199098 ctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 13703356 - 13703489
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||     
T  13703356 tctctctgcaataaatatgcaagggtattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaatttattctt 13703455  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
     | |||||||||||||||||||||||| ||||||    
T  13703456 cagaatggacaagtattatgaaacggatggagta 13703489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 43750279 - 43750398
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  43750279 ctctctcaacaataaatatgcaagagtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgagaaaccaaattattct 43750378  T
Q  140 ctaaaatggacaagtattat 159  Q
      ||||||||||||||||||    
T  43750379 aaaaaatggacaagtattat 43750398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 18356002 - 18355868
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | ||||||||||||||  |  ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  18356002 ctctctctacaataaataagtaagggtattattgataaatcaataattaatgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattct 18355903  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
      |||||||||||||||| ||||||||||||||||    
T  18355902 tcaaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 32835123 - 32834989
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||| |||||  ||||||||||||||| | |||||| ||||||||||||||||||||||||  |||||||| | |||||| ||||||||||    
T  32835123 ctctctctacaattaatatttaagggtattattgacaaaacaatacttaatgttgcattgaaacttgaaaatgacaagtactatgaaacgaaattattct 32835024  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||| |||||||||||||||||||||||||||||||    
T  32835023 ctacaatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 48820508 - 48820617
Alignment:
Q  65 gtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 164  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  48820508 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttttaaaatggacaagtattatgaaac 48820607  T
Q  165 ggagggagta 174  Q
    ||||| ||||    
T  48820608 ggaggaagta 48820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 31873996 - 31873886
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||| ||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31873996 ctctctctgcaataaatatataagggtatt-ttgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaataaaattattct 31873898  T
Q  140 ctaaaatggaca 151  Q
    ||||||||||||    
T  31873897 ctaaaatggaca 31873886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 48436368 - 48436490
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    |||||||||||||||||   ||| ||||||||||| ||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  48436368 tctctctacaataaataattaagtgtattattgacaagctaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattctc 48436467  T
Q  141 taaaatggacaagtattatgaaa 163  Q
     ||||  ||||| |||| |||||    
T  48436468 caaaagtgacaaatattgtgaaa 48436490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 48963262 - 48963390
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||| ||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||| |||  || || |||| ||||| |||||||||||    
T  48963262 ctctctttacaataaatatataaggatattattgacaagacaataattaatgttgcattgaaacttaaaaatgataaatattatgaaataaaattattct 48963361  T
Q  140 ctaaaatggacaagtattatgaaacggag 168  Q
    ||||||| || ||||| |||||| |||||    
T  48963362 ctaaaatagataagtaatatgaatcggag 48963390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 54086696 - 54086818
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    |||||||| |||| ||| | ||||||||||||||  |  ||||||||||||||| ||||||||||||||| ||||| ||   |||||||||| |||||||    
T  54086696 tctctctataatacataggtaagggtattattgataaatcaataattaatgttgtattgaaacttgaaagtgacaaataaaatgaaacaaaagtattctc 54086795  T
Q  141 taaaatggacaagtattatgaaa 163  Q
     |||||||||||||||| |||||    
T  54086796 caaaatggacaagtattgtgaaa 54086818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 26783661 - 26783746
Alignment:
Q  89 atgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||| |||||| |||||||||| | ||||||||| ||||    
T  26783661 atgttgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctttaaaatagacaagtattgtaaaacggaggaagta 26783746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 6901744 - 6901831
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 168  Q
    |||| ||||||||||||||||||||| |||| ||||||||  ||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  6901744 caatgattaatgttgcattgaaacttaaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaa-tattgtgaaacggag 6901831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 52009183 - 52009105
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagta 119  Q
    ||||||||||||||||| | || | |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  52009183 tctctctacaataaataggtaatgttattattgacaagacaataattaatgttgcatcgaaacttgaaagtgacaagta 52009105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 27707116 - 27706999
Alignment:
Q  46 ctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaa 145  Q
    |||||||||||||| | ||||||||||||| |||||||| |||||||| |||| ||| ||||||| || || |||||||||| ||||||||| |  | ||    
T  27707116 ctacaataaatatgta-gggtattattgacaagacaatagttaatgttacattaaaatttgaaagtgataaatattgtgaaataaaattatttttcagaa 27707018  T
Q  146 tggacaagtattatgaaac 164  Q
    |||| || |||||||||||    
T  27707017 tggataaatattatgaaac 27706999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 37293554 - 37293644
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaat-aattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaat 133  Q
    |||||||||||||||||| | ||||||| |||||| ||   ||| ||||||||||||||||||||||||||||||||||||   |||||||||||    
T  37293554 ctctctctacaataaataggtaagggtaatattga-ta---aatcaattaatgttgcattgaaacttgaaagggacaagtaaaatgaaacaaaat 37293644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 24064366 - 24064488
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | ||   |||||||||  |  |||||||||||||| |||| ||||||||||| |||| |||  |||||| |||||||||||    
T  24064366 ctctctctacaataaataggtaa---tattattgataaaccaataattaatgttacattaaaacttgaaagtgacatgtaaagtgaaataaaattattct 24064462  T
Q  140 ctaaaatggacaagtattatgaaacg 165  Q
    | ||||  |||| ||||| |||||||    
T  24064463 ccaaaaacgacatgtattgtgaaacg 24064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 19912146 - 19912215
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  19912146 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 38806320 - 38806382
Alignment:
Q  112 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  38806320 gacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 53559742 - 53559648
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattatt 137  Q
    ||||||||||||||| | ||  |||||||| |  |  |||| ||||||||||||||||||||||| || ||||||||   |||||||||||||||    
T  53559742 tctctacaataaataagtaacagtattattaataaatcaatgattaatgttgcattgaaacttgagagtgacaagtaaattgaaacaaaattatt 53559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 12095395 - 12095464
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   ||||||||||||||||  |||| ||||||||||||||||    
T  12095395 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 44276844 - 44276775
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| |||||||||| |||||    
T  44276844 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 46428916 - 46428864
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    ||||||| |||||  | |||||||||||||||||||||||||||||| |||||    
T  46428916 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaacggac 46428864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 54812087 - 54812139
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||  | ||||||| |||||||||||| |||||||||||||||    
T  54812087 ggtacaatagagggcaaagcccaaaagaaaagaaactgcgaaattaaccggac 54812139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 1455245 - 1455186
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||||||||||||| | ||||| ||||||||  || ||||||| |||||||    
T  1455245 caataattaatgttgcattgaaattggaaagtgacaagtaaagtaaaacaaatttattct 1455186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 37781082 - 37781149
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaag 110  Q
    ||||||||||||||||  ||||||||||||||| |  ||||||||||  ||| ||||||| |||||||    
T  37781082 tctctacaataaatatttaagggtattattgacaaaccaataattaactttggattgaaatttgaaag 37781149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 46188909 - 46188967
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcatt 98  Q
    |||||||||||||||||| |||||  |||||||||| |  |||||||||||||| ||||    
T  46188909 ctctctctacaataaataagcaagaatattattgacaaaccaataattaatgttacatt 46188967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 40228337 - 40228280
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcatt 98  Q
    ||||||||||||||||| | ||| || ||||| || || |||||||||||||||||||    
T  40228337 tctctctacaataaataagtaagagttttattaacaagccaataattaatgttgcatt 40228280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 42794846 - 42794797
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccg 239  Q
    ||||||| |||||  | |||||| ||||||||||||||||||||||||||    
T  42794846 ggtacaaaagagggcaaagcccaggagaaaagaaactacgaaattaaccg 42794797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 43912110 - 43912143
Alignment:
Q  209 cccaagagaaaagaaactacgaaattaaccggac 242  Q
    ||||||||||||||||||||||||||||| ||||    
T  43912110 cccaagagaaaagaaactacgaaattaactggac 43912143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 52805155 - 52805082
Alignment:
Q  46 ctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagta 119  Q
    ||||||| |||| | |||||| |||||||  |  ||||||| |||||||||| |||||||||||| ||||||||    
T  52805155 ctacaattaataagtaagggtgttattgataaatcaataataaatgttgcatcgaaacttgaaagtgacaagta 52805082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 37293469 - 37293437
Alignment:
Q  142 aaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||| ||||||||||||||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 23045413 - 23045279
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045413 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 23045314  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  23045313 ctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 40783791 - 40783657
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40783791 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 40783692  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  40783691 ctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 321770 - 321903
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  321770 tctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaaatattctc 321869  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||||||    
T  321870 taaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 284476 - 284610
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  284476 ctctctctacaataaatatgcaagggtattattgataagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 284575  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  284576 ctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 47037986 - 47037852
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  47037986 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaattattct 47037887  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     |||||| |||||||||||||||||||||||||||    
T  47037886 ttaaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 23526385 - 23526516
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |    
T  23526385 tctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattcttca 23526484  T
Q  143 aaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||||    
T  23526485 aaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 27211089 - 27210961
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  27211089 ctctctctgcaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttaaatgtgacaagtattgtgaaacaaaattattct 27210990  T
Q  140 ctaaaatggacaagtattatgaaacggag 168  Q
      ||||||||||| |||||||||||||||    
T  27210989 taaaaatggacaaatattatgaaacggag 27210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 24772040 - 24771906
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||| ||||||||||||||  |||| |||||||||  | |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24772040 ctctttctacaataaatatttaaggctattattgaaaaaacaataattaatattgcattgaaacttgaaagagacatgtattgtgaaacaaaattattct 24771941  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  24771940 ctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 33082887 - 33083021
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||| ||||||||||||||  ||||||||||||||  |||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  33082887 ctctttctacaataaatatttaagggtattattgagaagacaataattaatattgcattgaaatttgaaagagacatgtattgtgaaacaaaattattct 33082986  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     ||||||||||||||||||||||||||||||||||    
T  33082987 ttaaaatggacaagtattatgaaacggagggagta 33083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 46771781 - 46771910
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||    
T  46771781 ctctctctacaataaatatgtaagagtattattgacaagaaaataattaatgttacattgaaacttgaaagtgataagtattgtgaaacaaaattattct 46771880  T
Q  140 ctaaaatggacaagtattatgaaacggagg 169  Q
      |||||| |||||||||||||||||||||    
T  46771881 tcaaaatgaacaagtattatgaaacggagg 46771910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 40562416 - 40562293
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    ||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||  |    
T  40562416 tctctgcaataaatatgcaagg-tatcattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaatcattcttca 40562318  T
Q  143 aaatggacaagtattatgaaacgga 167  Q
    ||||||||||||||||| |||||||    
T  40562317 aaatggacaagtattataaaacgga 40562293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 40261419 - 40261320
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  40261419 ctctctctacaataaatatgtaagggtattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattattct 40261320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 51064888 - 51064754
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagac-aataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattc 138  Q
    |||||||||||||||||| | |||||||||||||| || || ||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||    
T  51064888 ctctctctacaataaataggtaagggtattattga-taaactaataattaacgttgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattc 51064790  T
Q  139 tctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||| |||||| || ||||||    
T  51064789 tctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 31003921 - 31003787
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | ||||||||||| ||| |  ||| ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  31003921 ctctctctacaataaataggtaagggtattatggacaaaccaacaattaatgttgcattgaaacttgaaagtggcaagtaatgtgaaacaaaattattct 31003822  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||  || ||||||| |||||| |||||||||    
T  31003821 ccaaaagcgataagtattgtgaaacagagggagta 31003787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 18396837 - 18396971
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | ||||| ||||||||  || ||||||||||||||||||||||||||||||| ||||| |  ||| |||||||||||||||    
T  18396837 ctctctctacaataaataagtaagggaattattgaaaagtcaataattaatgttgcattgaaacttgaaagtgacaaattatgtaaaacaaaattattct 18396936  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||   ||||||||| ||||| ||||||||||    
T  18396937 ccaaaagcaacaagtattgtgaaatggagggagta 18396971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 27143146 - 27143014
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||| |||||| | ||||||||||||||| |  ||||||||||||||| |||||||||||  || |||||||| |||||||||||||||||||    
T  27143146 ctctctctacagtaaataggtaagggtattattgacaaaccaataattaatgttgtattgaaacttg--agtgacaagtaatgtgaaacaaaattattct 27143049  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||  ||||| ||||||||| |||| ||||||    
T  27143048 ccaaaagcgacaattattatgaagcggatggagta 27143014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 40052597 - 40052501
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattatt 137  Q
    |||||||| |||||||| |||| | |||||||||| |  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  40052597 tctctctataataaataagcaacgatattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattatt 40052501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 14925610 - 14925734
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    ||||||||||||||| | ||| ||||||||||| |  |||||  ||| |||||||||||||||||||  ||||||||  ||||||||||||||| |||||    
T  14925610 tctctacaataaataggtaagagtattattgacaaaccaata--taaggttgcattgaaacttgaaaacgacaagtaaagtgaaacaaaattatgctcta 14925707  T
Q  143 aaatggacaagtattatgaaacggagg 169  Q
    |||  |||||||||| |||||||||||    
T  14925708 aaaacgacaagtattgtgaaacggagg 14925734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 34458858 - 34458724
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||| ||| |||||| ||||||||||| |   |  |||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||    
T  34458858 ctctctctataatgaatatgtaagggtattatcggtaaaccaataattaatgttgcatcgaaacttgaaagtgacaagtaaagtgaaacaaaattattct 34458759  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||  ||||  |||| ||||||||| ||||||    
T  34458758 ccaaaagcgacatatattgtgaaacggaaggagta 34458724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 23166983 - 23166858
Alignment:
Q  42 ctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 141  Q
    ||||||| ||||||||   ||| ||||||||||| |  ||||||||||||||| |||||||||||||||  | || || |||||||||||||||||||||    
T  23166983 ctctctaaaataaatagataagagtattattgacaaatcaataattaatgttgtattgaaacttgaaagtaataaataatgtgaaacaaaattattctct 23166884  T
Q  142 aaaatggacaagtattatgaaacgga 167  Q
    ||||  ||| |||||| |||||||||    
T  23166883 aaaagcgacgagtattgtgaaacgga 23166858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 24876714 - 24876831
Alignment:
Q  50 aataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatgga 149  Q
    |||||||| | ||| ||||||||||| |  ||||||||||||| ||||||| ||||||||| ||||||||   |||||||||||||||||| ||||  ||    
T  24876714 aataaataagtaagagtattattgacaaaccaataattaatgtcgcattgacacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaaacga 24876813  T
Q  150 caagtattatgaaacgga 167  Q
    |||||||| ||| |||||    
T  24876814 caagtattgtgagacgga 24876831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 31061590 - 31061463
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggaca---agtattgtgaaacaaaattattct 139  Q
    |||||||| ||||||||  |||||||||||| | |  |||||||||||||||||||||||||||| || ||||   |||| ||||||| ||||||||| |    
T  31061590 tctctacagtaaatatgtgagggtattattgtcaaaccaataattaatgttgcattgaaacttgagagtgacaagtagtaatgtgaaataaaattatttt 31061491  T
Q  140 ctaaaatggacaagtattatgaaacgga 167  Q
    | ||||  |||||||||| |||||||||    
T  31061490 ccaaaagtgacaagtattgtgaaacgga 31061463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 25929248 - 25929368
Alignment:
Q  47 tacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaat 146  Q
    |||||||||||   ||||||||||||||  |  ||||| |||||||||| |||||||||||||||| |||||    ||||||||||||||||| |||||     
T  25929248 tacaataaatagataagggtattattgataaatcaatatttaatgttgcgttgaaacttgaaaggggcaagtgaaatgaaacaaaattattctttaaaag 25929347  T
Q  147 ggacaagtattatgaaacgga 167  Q
     |||||||||| |||||||||    
T  25929348 cgacaagtattgtgaaacgga 25929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 1749457 - 1749515
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattc 138  Q
    |||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  1749457 caataactaatgttgcattgaaacttaaaagtaacaagtattgtgaaacaaaattattc 1749515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 1837962 - 1837827
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagta---ttgtgaaacaaaattat 136  Q
    |||||| |||||||||||    |||||||||||||  |  |||||||||||||||||||||||||| |||| ||||||||   |  ||||||||||||||    
T  1837962 ctctctttacaataaatagattagggtattattgataaatcaataattaatgttgcattgaaacttaaaagtgacaagtaaattattgaaacaaaattat 1837863  T
Q  137 tctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||  ||||   ||| ||||||||||||||| ||||||    
T  1837862 tcttcaaaa--aacatgtattatgaaacggatggagta 1837827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 22065040 - 22065092
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  22065040 ggtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggac 22065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 3657217 - 3657282
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaactt 105  Q
    |||||||||||||||||| | ||  ||||||||||| |  ||||||||||||||||||||||||||    
T  3657217 ctctctctacaataaataggtaaaagtattattgacaaaccaataattaatgttgcattgaaactt 3657282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 3943735 - 3943804
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  3943735 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 41959781 - 41959850
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||||||||    
T  41959781 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 14350565 - 14350510
Alignment:
Q  83 taattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattc 138  Q
    ||||||||||||||||||||||| |||| |||||||| | | ||||||||||||||    
T  14350565 taattaatgttgcattgaaactttaaagtgacaagtaatataaaacaaaattattc 14350510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 51064995 - 51065033
Alignment:
Q  136 ttctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 9589615 - 9589672
Alignment:
Q  117 gtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||||||||   ||||||||||| |||| ||||| ||||||||||||||||    
T  9589615 gtattttgaaacaaaaaatttctctaaaatagacatgtattttgaaacggagggagta 9589672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 7147056 - 7147190
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7147056 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 7147155  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  7147156 ctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 40058437 - 40058303
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40058437 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 40058338  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  40058337 ctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 40918865 - 40918731
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40918865 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 40918766  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  40918765 ctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 30999658 - 30999524
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  30999658 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtaacaagtattgtgaaacaaaattattct 30999559  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  30999558 ctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 43275533 - 43275399
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43275533 ctctctctacaataaatatgcaagggtattattgacaagataataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 43275434  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  43275433 ctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 36068195 - 36068357
Alignment:
Q  12 atcatcaattatttcattttannnnnnnctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagg 111  Q
    ||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||     
T  36068195 atcattaattatttcattttacttttttctctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagt 36068294  T
Q  112 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36068295 gacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 2540064 - 2539930
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2540064 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 2539965  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     ||||||||||||||||||||||||||| ||||||    
T  2539964 ttaaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 11174357 - 11174223
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11174357 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 11174258  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     ||||||| ||||||||||||||||||||||||||    
T  11174257 ttaaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 11646459 - 11646325
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  11646459 ctctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 11646360  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  11646359 ctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 37345714 - 37345848
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37345714 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaaatgacaagtattgtgaaacaaaattattct 37345813  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||| ||||||    
T  37345814 ctaaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 3585594 - 3585728
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  3585594 ctctctctacaataaatatgcaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 3585693  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||| |||||||||||||||||||| ||||||    
T  3585694 ctaaaatagacaagtattatgaaacggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 27035138 - 27035272
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27035138 ctctctctacagtaaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 27035237  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||| ||||||||||||||||||||| ||||    
T  27035238 ccaaaatgaacaagtattatgaaacggaggcagta 27035272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 20546424 - 20546308
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |    
T  20546424 tctctacaataaatatgtaagggtattattgacaagacaataattaatgttgcattgaaacctgaaagtgacaagtattgtgaaacaaaattattcttca 20546325  T
Q  143 aaatggacaagtattat 159  Q
    |||||||||||||||||    
T  20546324 aaatggacaagtattat 20546308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 27564000 - 27563885
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||    
T  27564000 tctctctacaataaataggtaagggtattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtaatatgaaacaaaattgttctc 27563901  T
Q  141 taaaatggacaagtat 156  Q
     ||||  |||||||||    
T  27563900 caaaagcgacaagtat 27563885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 35866756 - 35866890
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||| ||||| ||| ||||||||||  |  ||||||||||||||| ||||||||||||||| ||||||||   |||||||||||||||||    
T  35866756 ctctctctacaatagatatgtaagagtattattgataaaccaataattaatgttgaattgaaacttgaaagtgacaagtaaaatgaaacaaaattattct 35866855  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||| |||||||||| ||||||||| ||||||    
T  35866856 ccaaaatagacaagtattgtgaaacggatggagta 35866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 28568061 - 28568195
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||| |||||||||| | ||||||| ||||||  |  |||||||||||||||||||||||||| |||| ||||||||   ||||||||||| |||||    
T  28568061 ctctctcaacaataaataggtaagggtaatattgataaaccaataattaatgttgcattgaaacttcaaagtgacaagtaaaatgaaacaaaataattct 28568160  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||||||||||||| ||||| ||||||||||    
T  28568161 ccaaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 28575654 - 28575788
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||| |||||||||| | ||||||| ||||||  |  |||||||||||||||||||||||||| |||| ||||||||   ||||||||||| |||||    
T  28575654 ctctctcaacaataaataggtaagggtaatattgataaaccaataattaatgttgcattgaaacttcaaagtgacaagtaaaatgaaacaaaataattct 28575753  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||||||||||||| ||||| ||||||||||    
T  28575754 ccaaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 26628950 - 26628822
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | ||||||||||||||  |  ||||||||||||||||||||||||||||||  ||||| ||  ||||||||||||||||||    
T  26628950 ctctctctacaataaataggtaagggtattattgataaatcaataattaatgttgcattgaaacttgaaaatgacaaataaagtgaaacaaaattattct 26628851  T
Q  140 ctaaaatggacaagtattatgaaacggag 168  Q
    | ||||   ||| ||||| ||||||||||    
T  26628850 ccaaaagcaacatgtattgtgaaacggag 26628822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 28562604 - 28562698
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||| ||||||||   ||||||||||| |||||  |||||||| ||||||| ||| ||||||||||||    
T  28562604 caataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaataattcttcaaaatggataagtattgtgagacggagggagta 28562698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 45400902 - 45400770
Alignment:
Q  42 ctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 141  Q
    |||||||||||||||| | |||  |||||||||  |   |||||||||||||||||||||| || |||| ||||| ||  |||||||||||||||||||     
T  45400902 ctctctacaataaataagtaagaatattattgataaattaataattaatgttgcattgaaatttaaaagtgacaaataaagtgaaacaaaattattctcc 45400803  T
Q  142 aaaatggacaagtattatgaaacggagggagta 174  Q
    ||||  |||  ||||||||||||||||||||||    
T  45400802 aaaaacgacttgtattatgaaacggagggagta 45400770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 13881089 - 13880991
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattc 138  Q
    |||||||||||||||||  | |||  ||||||| || |  ||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||    
T  13881089 ctctctctacaataaattagtaagattattattaacaaatcaataattaatattgcattgaaacttgaaagtgacaagtaatttgaaacaaaattattc 13880991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 10180981 - 10180897
Alignment:
Q  61 aagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaa 145  Q
    ||||||||||||||| |    |||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||    
T  10180981 aagggtattattgacaaattcataactaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattgttctccaaaa 10180897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 44146064 - 44146012
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||  | |||||||||||||||||| |||||||||||||||||    
T  44146064 ggtacaatagagggcaaagcccaagagaaaagaaattacgaaattaaccggac 44146012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 41305831 - 41305762
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| |||||||||| |||||    
T  41305831 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggagagagta 41305762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 38560478 - 38560508
Alignment:
Q  211 caagagaaaagaaactacgaaattaaccgga 241  Q
    |||||||||||||||||||||||||||||||    
T  38560478 caagagaaaagaaactacgaaattaaccgga 38560508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 45278081 - 45278013
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| |||||| |||||||||    
T  45278081 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaac-gagggagta 45278013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 12806987 - 12806853
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12806987 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagagacaagtattgtgaaacaaaattattct 12806888  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  12806887 ctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 40886744 - 40886610
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40886744 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 40886645  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  40886644 ctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 30720654 - 30720492
Alignment:
Q  12 atcatcaattatttcattttannnnnnnctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagg 111  Q
    |||||| ||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||     
T  30720654 atcatctattatttcattttatttttttctctctctacaataaatatgcaagggtattattgacaagacaataactaatgttgcattgaaacttgaaagt 30720555  T
Q  112 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30720554 gacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 36561233 - 36561099
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36561233 ctctctctacaataaatatgcaagggtattattgacaagacaatacttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 36561134  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  36561133 ctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 25773795 - 25773926
Alignment:
Q  43 tctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctcta 142  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||    
T  25773795 tctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgataagtattgtgaaacaaacttattctcta 25773894  T
Q  143 aaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||| |||||    
T  25773895 aaatggacaagtattatgaaacggagagagta 25773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 10285191 - 10285058
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10285191 ctctctctacaataaatatgcaagg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 10285093  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     |||||| |||||||||||||||||||||||||||    
T  10285092 ttaaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 25683363 - 25683229
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  25683363 ctctctctacaataaatatgtaagggtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagttttatgaaacaaaattattct 25683264  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||||||||||||||||||||||||||||||    
T  25683263 ccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 23097857 - 23097724
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  23097857 tctctctacaataaatatgtaagggtattattgacaagacaataattaatattgcattgaaacatgaaagtaacaagtattgtgaaacaaaattattctc 23097758  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
     |||||||||||||||||||||||||| ||||||    
T  23097757 caaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 37900755 - 37900623
Alignment:
Q  42 ctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctct 141  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||      
T  37900755 ctctctgcaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtatcgtgaaacaaaattattcttc 37900656  T
Q  142 aaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| |||||||||||||||||||| ||||||    
T  37900655 aaaatagacaagtattatgaaacggaaggagta 37900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 16983401 - 16983532
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||     
T  16983401 tctctctgcaatagatatgcaagggtattattgaaaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattctt 16983500  T
Q  141 taaaatggacaagtattatgaaacggagggag 172  Q
     ||||| |||||||||||| |||| |||||||    
T  16983501 caaaatagacaagtattataaaacagagggag 16983532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 734472 - 734339
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    |||||||| |||| ||| | ||| ||||||||||  |  ||||||||||||||| ||||||||||||||| ||||||||  |||||||||||||||||||    
T  734472 tctctctataatatataggtaagagtattattgataaaccaataattaatgttgtattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctc 734373  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
     |||||||||||||||| |||||||| |||||||    
T  734372 caaaatggacaagtattgtgaaacggtgggagta 734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 39071025 - 39071153
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | ||| | ||||||||  |  ||||||||||||||||||||| |||| |||| ||||||||  ||||||||||||||||||    
T  39071025 ctctctctacaataaataggtaagtggattattgataaaccaataattaatgttgcattgatacttaaaagtgacaagtaaagtgaaacaaaattattct 39071124  T
Q  140 ctaaaatggacaagtattatgaaacggag 168  Q
    | ||||| |||||||||| |||| |||||    
T  39071125 caaaaatagacaagtattgtgaatcggag 39071153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 11319700 - 11319826
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||| | ||| |||||||| |  |  ||||||||||| ||||||| |||| |||||| || || ||  |||||||||||||||||||    
T  11319700 tctctctacaataaataggtaagagtattattaataaaccaataattaatattgcattaaaacctgaaagtgataaataaagtgaaacaaaattattctc 11319799  T
Q  141 taaaatggacaagtattatgaaacgga 167  Q
    |||||| ||||||||||||||||||||    
T  11319800 taaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 1056756 - 1056625
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    |||||||||||||||||   ||| ||||||||||| |   |||||||||||||||||||||||||||||| ||  |||| | ||||| ||||||||||||    
T  1056756 tctctctacaataaataaataagagtattattgacaaactaataattaatgttgcattgaaacttgaaagtga-tagtaat-tgaaataaaattattctc 1056659  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
     ||||  |||||||||| ||||||||||||||||    
T  1056658 caaaagtgacaagtattgtgaaacggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 16054254 - 16054377
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||||||||   ||||||||||||||| |   |||||||||||||||||||||||||||||| |||||  |  ||||| ||||||||||||    
T  16054254 ctctctctacaataaatagataagggtattattgacaaactaataattaatgttgcattgaaacttgaaagtgacaaccaaagtgaaccaaaattattct 16054353  T
Q  140 ctaaaatggacaagtattatgaaa 163  Q
    | ||||  |||| ||||| |||||    
T  16054354 ccaaaagcgacatgtattttgaaa 16054377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 26168096 - 26168185
Alignment:
Q  85 attaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||| ||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||  |||| ||||  ||||||||| ||||||    
T  26168096 attaatcttgcattgaaacttgaaagtgacaattaaagtgaaacaaaattattctctaaaaacgacatgtatcgtgaaacggaaggagta 26168185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 30403075 - 30402981
Alignment:
Q  61 aagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagta 155  Q
    ||||||||||||||| |  ||||||||||| ||| |||||||||| |||| ||||||||   ||||| |||||||||||||||||  ||||||||    
T  30403075 aagggtattattgacaaaccaataattaattttgtattgaaacttaaaagtgacaagtaaaatgaaataaaattattctctaaaagcgacaagta 30402981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 11795375 - 11795314
Alignment:
Q  82 ataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaa 143  Q
    ||||||||||||||||||||||||||||| || || ||  ||||||||||||||||||||||    
T  11795375 ataattaatgttgcattgaaacttgaaagtgataaataaagtgaaacaaaattattctctaa 11795314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 7277557 - 7277495
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaa 102  Q
    |||| ||||||||||||| | ||||| ||||||||| |||||||||||||| |||||||||||    
T  7277557 ctctatctacaataaataagtaagggcattattgacaagacaataattaattttgcattgaaa 7277495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 18934413 - 18934361
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||  | || |||||||||||||||||||||||||||||||||    
T  18934413 ggtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccggac 18934361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 11797694 - 11797768
Alignment:
Q  45 tctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagta 119  Q
    ||||||||||||| |||||||||| |||||| |   |||||||||||||| ||||||| ||||||  ||||||||    
T  11797694 tctacaataaataagcaagggtatcattgacaaactaataattaatgttgtattgaaatttgaaaatgacaagta 11797768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 15304891 - 15304822
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| | ||||||||||||||    
T  15304891 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttaaaacggagggagta 15304822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 239
Target Start/End: Original strand, 4560174 - 4560204
Alignment:
Q  209 cccaagagaaaagaaactacgaaattaaccg 239  Q
    |||||||||||||||||||||||||||||||    
T  4560174 cccaagagaaaagaaactacgaaattaaccg 4560204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 12305687 - 12305728
Alignment:
Q  60 caagggtattattgactagacaataattaatgttgcattgaa 101  Q
    |||||||||||||||| | |||||||| ||||||||||||||    
T  12305687 caagggtattattgacaaaacaataatcaatgttgcattgaa 12305728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 22388271 - 22388138
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22388271 tctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattctc 22388172  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||||||||    
T  22388171 taaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 23366932 - 23367066
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  23366932 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgtattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 23367031  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  23367032 ctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 3519050 - 3519184
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  3519050 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttacattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 3519149  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||| ||||    
T  3519150 ctaaaatggacaagtattatgaaacggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 39938313 - 39938447
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  39938313 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattaaaacttaaaagtgacaagtattgtgaaacaaaattattct 39938412  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||| ||||||||||||||    
T  39938413 ctaaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 1102645 - 1102778
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  1102645 tctctctacaataaatatgcaagggtgttattgacaagacaataattaatgttgcattgaaacttgaaagtgacgagtattgtgaaacaaaattattctc 1102744  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    | ||||||||||||||||||||||||||||||||    
T  1102745 tcaaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 1646430 - 1646564
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  1646430 ctctctctacaataaatatgcaagggtattattgacaagataatacttaatgttgcattgaaacttgaaagtgataagtattgtgaaacaaaattattct 1646529  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||| ||||||||||||||||||||||    
T  1646530 ctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 37673876 - 37673743
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||    
T  37673876 tctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttggaagtgacaagtattttgaaacaaagttattctc 37673777  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  37673776 taaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 12969874 - 12969740
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||  ||||||||||||||  |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  12969874 ctctctctacaataaatatttaagggtattattgagaagacaataattaatattgcattgaaacttgaaagagacatgtattgtgaaacaaaattattct 12969775  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    | |||||||||||||||||||||||||||||||||    
T  12969774 ccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 174
Target Start/End: Complemental strand, 40757024 - 40756911
Alignment:
Q  61 aagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatg 160  Q
    ||||||||||||||  |  ||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||| |||||||||||||||||||    
T  40757024 aagggtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaactaaagtgaaacaaaattattctccaaaatggacaagtattatg 40756925  T
Q  161 aaacggagggagta 174  Q
    ||||||||||||||    
T  40756924 aaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 39562023 - 39561895
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||| | ||||||||||||||| |  ||||||||||||||||||||||| || |||| |||||     |||||||||||||||||||    
T  39562023 tctctctacaataaataagtaagggtattattgacaaaccaataattaatgttgcattgaaatttaaaagtgacaa-----gtgaaacaaaattattctc 39561929  T
Q  141 taaaatggacaagtattatgaaacggagggagta 174  Q
     ||||  |||| ||||| ||||||||||||||||    
T  39561928 caaaaacgacatgtattgtgaaacggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 28110220 - 28110095
Alignment:
Q  49 caataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatgg 148  Q
    ||||||||||| ||||||||||||||  |  ||||||||||||||||||||||||||||||  |||||||| ||||||||||  || ||||| ||||  |    
T  28110220 caataaatatgtaagggtattattgataaaccaataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaagttttttctccaaaaacg 28110121  T
Q  149 acaagtattatgaaacggagggagta 174  Q
    | || |||| ||||||||||| ||||    
T  28110120 ataaatattgtgaaacggaggaagta 28110095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 37284650 - 37284525
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||| | ||| |||||| |||  |  ||||||| ||||||||||||||||||||||  ||||||||  |||||||||||||||||||    
T  37284650 tctctctacaataaataggtaagagtattagtgataaatcaataat-aatgttgcattgaaacttgaaaatgacaagtaaagtgaaacaaaattattctc 37284552  T
Q  141 taaaatggacaagtattatgaaacggag 168  Q
     ||||  || ||||||| ||||||||||    
T  37284551 caaaagaga-aagtattgtgaaacggag 37284525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 36447441 - 36447532
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaggga 171  Q
    ||||||||||  ||||||||||| ||||||| ||| | ||  ||||||||||||||||||||||||  |||| ||||| |||||||||||||    
T  36447441 caataattaacattgcattgaaatttgaaagtgacgaataaagtgaaacaaaattattctctaaaagcgacatgtattgtgaaacggaggga 36447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 19976471 - 19976568
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagac-aataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattatt 137  Q
    ||||||||||||||||||   || | ||||||||| || || |||||||||||||||||||||||||||||| ||||||||   |||||||||||||||    
T  19976471 ctctctctacaataaatagataatgatattattga-taaactaataattaatgttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattatt 19976568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 34242117 - 34242221
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||| | |||| |||||||||  |  ||||| ||||| ||||||| |||||| |||| ||| ||||   |||||||||||||||||    
T  34242117 ctctctctacaataaataggtaaggatattattgataaaccaatatttaatattgcattaaaacttaaaagtgaccagtaaaatgaaacaaaattattct 34242216  T
Q  140 ctaaa 144  Q
    |||||    
T  34242217 ctaaa 34242221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 32839022 - 32838964
Alignment:
Q  81 aataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||| ||||||||||||||||||| ||||||||   |||||||||||||||||    
T  32839022 aataattaatattgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattct 32838964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 28401468 - 28401399
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaag 110  Q
    ||||| |||||||| || ||||||||||||||||| |  ||||||||||||| || ||||||||||||||    
T  28401468 tctctttacaataattaggcaagggtattattgacaaatcaataattaatgtggccttgaaacttgaaag 28401399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 17290389 - 17290337
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    |||||||||||||  | || |||||||||||||||||||||||||||||||||    
T  17290389 ggtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccggac 17290337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 4917908 - 4918031
Alignment:
Q  44 ctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaa 143  Q
    |||||| ||||||| | ||||| | ||||||| || ||||||||||||||| ||| ||| | ||||| |||||||| |||||| ||||||| || |  ||    
T  4917908 ctctaccataaataggtaagggaactattgacaagccaataattaatgttgaattaaaattcgaaagtgacaagtaatgtgaagcaaaattgtttttcaa 4918007  T
Q  144 aatggacaagtattatgaaacgga 167  Q
    ||  ||||| |||| |||||||||    
T  4918008 aaatgacaaatattgtgaaacgga 4918031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 14779964 - 14780023
Alignment:
Q  86 ttaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaa 145  Q
    ||||| ||||||||||||||||||| ||||||||   |||||||||||||||||| ||||    
T  14779964 ttaatcttgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaa 14780023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 27813954 - 27814088
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27813954 ctctctctacaataaatatgcaagggtattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 27814053  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  27814054 ctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 36453258 - 36453124
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36453258 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 36453159  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||||||||||||||||||| |||||    
T  36453158 ctaaaatggacaagtattatgaaacggagagagta 36453124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 10981651 - 10981785
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10981651 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 10981750  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||| |||||||||| ||||||||||    
T  10981751 ctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 25614487 - 25614353
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  25614487 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaattattct 25614388  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||||||||||| |||||||||||||||||||||    
T  25614387 ctaaaatggacaattattatgaaacggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 47110593 - 47110727
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47110593 ctctctctacaataaatatgcaagggtattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattct 47110692  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||| | ||||||||||||||||||||||||    
T  47110693 ctaaaatgaataagtattatgaaacggagggagta 47110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 40349105 - 40349238
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  40349105 ctctctctacaataaatatgcaagggtattattgaccaaacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaac-aaattattct 40349203  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  40349204 ctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 16662236 - 16662370
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||| ||||||||||||| | |||||||||| |||| |  ||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||    
T  16662236 ctctatctacaataaataggtaagggtattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgacaagtaatttaaaacaaaattattct 16662335  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
      ||||  |||||||||| ||||| ||||||||||    
T  16662336 tcaaaagtgacaagtattgtgaaatggagggagta 16662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 17636596 - 17636730
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||| ||||||||||||| | |||||||||| |||| |  ||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||    
T  17636596 ctctatctacaataaataggtaagggtattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgacaagtaatttaaaacaaaattattct 17636695  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
      ||||  |||||||||| ||||| ||||||||||    
T  17636696 tcaaaagtgacaagtattgtgaaatggagggagta 17636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 27941113 - 27941013
Alignment:
Q  45 tctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaa 144  Q
    ||||||||||||| | ||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| |||    
T  27941113 tctacaataaataagtaagggtattattgacaagccaataattaatgttgcaatgaaacttgaaagtgacaagtaatgtgaaacaaaattgttctccaaa 27941014  T
Q  145 a 145  Q
    |    
T  27941013 a 27941013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 3091657 - 3091755
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||||||| |||  ||||||||  ||||||||||||||||||    
T  3091657 tctctctacaataaatatgtaagggtattattgacaaaccaatatttaatgttgcattgaaacttaaaaatgacaagtaaagtgaaacaaaattattct 3091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 24456898 - 24456800
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    ||||||||||||| ||| ||||||||||||||||  |   | || |||||||||||||||||||||| || ||||||||  || |||||||||||||||    
T  24456898 tctctctacaatacataggcaagggtattattgataaattagtagttaatgttgcattgaaacttgagagtgacaagtaaagttaaacaaaattattct 24456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 24468860 - 24468808
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    ||||||| |||||  | ||||||||||||||||||||||||||||||||||||    
T  24468860 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggac 24468808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 24473808 - 24473756
Alignment:
Q  190 ggtacaatagaggatatagcccaagagaaaagaaactacgaaattaaccggac 242  Q
    ||||||| |||||  | ||||||||||||||||||||||||||||||||||||    
T  24473808 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggac 24473756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 16360560 - 16360653
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||||||| ||||||||||||||| ||||||||  ||||| | ||||||||||| ||||  ||||| |||| |||||| || ||||||    
T  16360560 caatatttaatgttgtattgaaacttgaaagtgacaagtaaagtgaagc-aaattattctccaaaaacgacaaatattgtgaaacagaaggagta 16360653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 8380082 - 8380157
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaa 116  Q
    ||||||||||||||||| | ||||||||| || || |  |||||| |||||||| |||||||||| |||| |||||    
T  8380082 tctctctacaataaataagtaagggtatttttaacaaaccaataactaatgttgtattgaaacttaaaagtgacaa 8380157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 25059519 - 25059456
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggag 168  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||||    
T  25059519 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 2910928 - 2910859
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||| |||||| |||| ||||| ||||||||||||||||    
T  2910928 tgaaatggacatgtattttgaaacaaaaaatttctttaaaatagacatgtattttgaaacggagggagta 2910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 305 - 438
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  305 ctctctctacaataaatatgcaagggtattattgacaagacaata-ttaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattatttt 403  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  404 ctaaaatggacaagtattatgaaacggagggagta 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 45596 - 45730
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||| ||||||||||||||  |||| |||||||||  | |||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  45596 ctctttctacaataaatatttaaggttattattgataatacaataattaatattgcattgaaatttgaaagagacatgtattgtgaaacaaaattattct 45695  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
    |||||||||||||||||||||||||||||||||||    
T  45696 ctaaaatggacaagtattatgaaacggagggagta 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 401 - 287
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||||||||||||||||| || | |||||||||| |||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||    
T  401 ctctctctacaataaatatgtaatgatattattgacaagacaataattaatgttgcattaaaatttaaaagtgacaagtattgtgaaacaaaattattct 302  T
Q  140 ctaaaatggacaagt 154  Q
    |||||||||||||||    
T  301 ctaaaatggacaagt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 7033 - 6911
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||||| | ||| |||||||||||  | |||||||||||||||||||||||||| ||| |||||| || | ||||||||||||||||||    
T  7033 tctctctacaataaataagtaagagtattattgacacgtcaataattaatgttgcattgaaactt-aaacggacaaataatatgaaacaaaattattctc 6935  T
Q  141 taaaatggacaagtattatgaaac 164  Q
     ||||  |||||||||| ||||||    
T  6934 caaaaacgacaagtattgtgaaac 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 7811 - 7945
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||||| ||||||||||| | ||| ||||||||||| |  | ||||||||||||||||| ||||||||||| |||||||| ||||||  |||||||||||    
T  7811 ctctctttacaataaataggtaagagtattattgacaaaccgataattaatgttgcattaaaacttgaaagtgacaagtaatgtgaattaaaattattct 7910  T
Q  140 ctaaaatggacaagtattatgaaacggagggagta 174  Q
     |||||  |||||||||| |||||| || ||||||    
T  7911 ttaaaaacgacaagtattgtgaaacagatggagta 7945  T

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Target: scaffold0056 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 71226 - 71350
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattct 139  Q
    |||| ||||||||||||| | |||||||| ||| || |  ||||||||||| ||||||| |||||| |||| |||||||| ||||||| |||||||||||    
T  71226 ctctatctacaataaataggtaagggtataattaacaaaccaataattaattttgcattcaaacttaaaagtgacaagtaatgtgaaataaaattattct 71325  T
Q  140 ctaaaatggacaagtattatgaaac 164  Q
      ||||  |||||||||| ||||||    
T  71326 tcaaaaacgacaagtattgtgaaac 71350  T

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Target: scaffold0025 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 65278 - 65199
Alignment:
Q  61 aagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||| |  ||||||||||| ||||||||||| || |||| |||||||| | ||||||||||||||||||    
T  65278 aagggtattattgacaaaccaataattaatattgcattgaaatttaaaagtgacaagtaatatgaaacaaaattattctc 65199  T

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Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 15456 - 15351
Alignment:
Q  41 tctctctacaataaatatgcaagggtattattgactagacaataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    ||||||||||||||| | | ||| ||||||||||| |  | |||||||||||||||||||||||| ||||  ||| |||  ||||||||| ||| ||| |    
T  15456 tctctctacaataaaaaagtaagcgtattattgacaaaccgataattaatgttgcattgaaacttaaaagttacatgtaaagtgaaacaatattgttcac 15357  T
Q  141 taaaat 146  Q
    ||||||    
T  15356 taaaat 15351  T

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Target: scaffold0257 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 23844 - 23913
Alignment:
Q  105 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 174  Q
    ||||| ||||| ||||| ||||||||||   |||||||||||||||| ||||| ||||||||| ||||||    
T  23844 tgaaatggacatgtattttgaaacaaaaaatttctctaaaatggacatgtattttgaaacggatggagta 23913  T

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Target: scaffold1431 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 33 - 1
Alignment:
Q  40 ctctctctacaataaatatgcaagggtattatt 72  Q
    |||||||||||||||||||||||||||||||||    
T  33 ctctctctacaataaatatgcaagggtattatt 1  T

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Target: scaffold0939 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 1124 - 1184
Alignment:
Q  80 caataattaatgttgcattgaaacttgaaagggacaagtattgtgaaacaaaattattctc 140  Q
    |||||||||||||||||| ||||||| |||  ||||||||   | ||||||||||||||||    
T  1124 caataattaatgttgcatcgaaacttaaaaatgacaagtaaaataaaacaaaattattctc 1184  T

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