View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_36 (Length: 238)
Name: NF15415_low_36
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 28798362 - 28798493
Alignment:
| Q |
1 |
tatatagagagcctatctggtgagaactaatgtttacataggaaacatatccggtatataaatataatacattcaaggagccggagaaaaattagtatca |
100 |
Q |
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| T |
28798362 |
tatatagagagcctatctggtgagaactaatgtttacataggaagcgtatccggtatataaatataatacattgaaggagccagagaaaaattagt---- |
28798457 |
T |
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| Q |
101 |
catcacaataaacattaattctcacttgatacgctcc |
137 |
Q |
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| T |
28798458 |
-atcacaataaacattcattctcacttgatacgctcc |
28798493 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 28798521 - 28798574
Alignment:
| Q |
166 |
agattagaattctaatggtaaacataaaaatttgattaaatgacaaggatgtgt |
219 |
Q |
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| T |
28798521 |
agattagaattctaatggtaaacataaaaatttgattaaatgacaaggatgtgt |
28798574 |
T |
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