View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_38 (Length: 227)
Name: NF15415_low_38
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 27957973 - 27958085
Alignment:
| Q |
95 |
accatcaacattcatacagaagcaacaaaaataaaagtgaagtgtg-aaaaatattttgcaagagagtgtagtaatggaagaagggaaaggaagagtttg |
193 |
Q |
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| T |
27957973 |
accatcaacattcatacagaagcaacaaaaataaaagtgaagtgtgaaaaaatattttgcaagagtgtgt--taatggaagaagggaaaggaagagtttg |
27958070 |
T |
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| Q |
194 |
tgtgactggaggtac |
208 |
Q |
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| T |
27958071 |
tgtgactggaggtac |
27958085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 27983792 - 27983904
Alignment:
| Q |
99 |
tcaacattcatacagaagcaacaaaaataaaagtgaagtgtgaaaa-atattttgcaagagagtgtagtaatggaagaagggaaaggaagagtttgtgtg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
27983792 |
tcaacattcatacagaagcaacaaaaataaaagtgaagtgtgaaaatatattttgcaagagagtgtggtgatggaaaaagggaaaggaagagtttgtgta |
27983891 |
T |
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| Q |
198 |
actggaggtactg |
210 |
Q |
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| T |
27983892 |
actggaggtactg |
27983904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 28001938 - 28002047
Alignment:
| Q |
98 |
atcaacattcatacagaagcaacaaaaataaaagtgaagtgtgaaaaa-tattttgcaagagagtgtagtaatggaagaagggaaaggaagagtttgtgt |
196 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
28001938 |
atcaacattcatacagaacgaacaaaaataaaagtgaagtgtgaaaaaatattttgcaggagtgtgt--taatggaagaagggaaaggaagagtttgtgt |
28002035 |
T |
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| Q |
197 |
gactggaggtac |
208 |
Q |
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| T |
28002036 |
gactggaggtac |
28002047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 28011705 - 28011772
Alignment:
| Q |
141 |
aaaaatattttgcaagagagtgtagtaatggaagaagggaaaggaagagtttgtgtgactggaggtac |
208 |
Q |
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| T |
28011705 |
aaaaatattttgcaagagagtgtagtaatggaagaagggaaaggaagagtttgtgtgactggaggtac |
28011772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 27991442 - 27991487
Alignment:
| Q |
163 |
tagtaatggaagaagggaaaggaagagtttgtgtgactggaggtac |
208 |
Q |
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| T |
27991442 |
tagtaatggaagagggaaaaggaagagtttgtgtgactggaggtac |
27991487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27957901 - 27957945
Alignment:
| Q |
17 |
cacagaaaagcaacaaccaagaaatttagatgcatgcatgcgtgt |
61 |
Q |
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| T |
27957901 |
cacagaaaagtaacaaccaagaactttagatgcatgcatgcgtgt |
27957945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 27943558 - 27943592
Alignment:
| Q |
174 |
gaagggaaaggaagagtttgtgtgactggaggtac |
208 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
27943558 |
gaaggaaaaggaagagtttgtgtgactggaggtac |
27943592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 27998280 - 27998317
Alignment:
| Q |
157 |
agagtgtagtaatggaagaagggaaaggaagagtttgt |
194 |
Q |
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| T |
27998280 |
agagtgtgataatggaagaagggaaaggaagagtttgt |
27998317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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