View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_39 (Length: 225)
Name: NF15415_low_39
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_39 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2850410 - 2850634
Alignment:
| Q |
1 |
atgtctttcaaatcatcaaatcctactattacatatttagaatcaacaaaataaaagtttacatgttgtagagcccattgtggatgaagataatttcatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2850410 |
atgtctttcaaatcatcaaatcctactattacatatttagaatcaacaaaataaaagtttacatgttgtagggcccattgtggatgaagataatttcatt |
2850509 |
T |
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| Q |
101 |
aacatttggttctttgcatatctttttgcgaagccggtactcttaattgccatagtttgaagtacttttgaattctccataatatatgtaacaaattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2850510 |
aacatttggttctttgcatatctttttgcgaagccggtactcttaattgccatagtttgaagtacttttgaattctccataatatatgtaacaaattgaa |
2850609 |
T |
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| Q |
201 |
actcacttttcttgtctttgtaatc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
2850610 |
actcacttttcttgtctttgtaatc |
2850634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 27814930 - 27815106
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttctttgcatatctttttgcgaagccggtactcttaatt |
148 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||| |||||||| | | | | |||| || ||| |||||| |
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| T |
27814930 |
aaataaaagtttacatgttgtaaaaccctttgtggatgaagataattccattaacatttggtgctttgcatttatatccactaagcaggaacttttaatt |
27815029 |
T |
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| Q |
149 |
gccatagtttgaagtacttttgaattctccataatatatgtaacaaattgaaactcacttttcttgtctttgtaatc |
225 |
Q |
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| T |
27815030 |
gtcatcgtctgcagtacttttgaattctgcataatatatgttgcaaatcgaagctcatttttcgttcctttgtaatc |
27815106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 7161295 - 7161355
Alignment:
| Q |
55 |
aagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttcttt |
115 |
Q |
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| T |
7161295 |
aagtttacatgttgtagatccccttgtgcatgaagatgatttcagtaacatttggttcttt |
7161355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 48446549 - 48446500
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttca |
98 |
Q |
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| T |
48446549 |
aaatagaagtttacatgttgtagagccccttgtgcatgaagataatttca |
48446500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 14349627 - 14349693
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttcttt |
115 |
Q |
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| T |
14349627 |
aaataaaagtttacatgttgtagagccccttgagcatgaagatagtttcagcgacatttggtacttt |
14349693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 14349702 - 14349771
Alignment:
| Q |
136 |
ggtactcttaattgccatagtttgaagtacttttgaattctccataatatatgtaacaaattgaaactca |
205 |
Q |
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| T |
14349702 |
ggtactcttaattgtcatggtttctagtacttttgaatgctgcataatatattttgcaaattcaaactca |
14349771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 39438541 - 39438403
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttctttgcatatctttttgcgaagccggtactcttaatt |
148 |
Q |
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|||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| ||||| ||| ||| | | | | | | ||||| |||||| |
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| T |
39438541 |
aaataaaagtttacatgtcgtagagcctcttgtatatgaagatagtttcattaacaattggtacttcacattcatatctagggaacgtgtactattaatt |
39438442 |
T |
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| Q |
149 |
gccatagtttgaagtacttttgaattctccataatatat |
187 |
Q |
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| T |
39438441 |
gtcatagtttctagtacttttgaattctccataatatat |
39438403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 39425438 - 39425372
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttcattaacatttggttcttt |
115 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| ||||| |||| |
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| T |
39425438 |
aaataaaagtttgcatgttgtagagcctcttgtgcttgaagataatttcgctaacaattggtacttt |
39425372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 47367643 - 47367688
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataat |
94 |
Q |
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| T |
47367643 |
aaataaaagtttacaatttggagagccccttgtggatgaagataat |
47367688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 39456802 - 39456850
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttc |
97 |
Q |
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| T |
39456802 |
aaataaaagtttgcatgttgtagagcctcttgtgcttgaagataatttc |
39456850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 43099448 - 43099399
Alignment:
| Q |
49 |
aaataaaagtttacatgttgtagagcccattgtggatgaagataatttca |
98 |
Q |
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||||||||| |||||||||||||||||| |||| |||| |||||||||| |
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| T |
43099448 |
aaataaaagcttacatgttgtagagccccttgtacatgatgataatttca |
43099399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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