View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_4 (Length: 703)
Name: NF15415_low_4
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 1e-89; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 267 - 526
Target Start/End: Original strand, 8362146 - 8362405
Alignment:
| Q |
267 |
gtcttaataatgtcactagactcataataatatcttacgttttcattttagcttgttcnnnnnnnnnnnnnnnntatcttacgttttcattttcgtttat |
366 |
Q |
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| T |
8362146 |
gtcttaataatgtcactagactcataataatatcttacgttttcattttggtttgttcaaaaaaaataaaaaaatatcttacgttttcattttcgtttat |
8362245 |
T |
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| Q |
367 |
gaatccatgtggcattggaacttgagcatacatgtagctagcaacttccttgcaagtcatgaacttcaaaactaagttccggtatataaggaaactgcag |
466 |
Q |
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| T |
8362246 |
ggatccatgtgacattggaatttcaacatacatgtagctagcaacttccttgcaaatcatgaacttcaaaactaagttcctgtatataaggaaactacaa |
8362345 |
T |
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| Q |
467 |
agcatgaattgcatataacaatacatataatatagttttaaagtgtaaggtgaaaaatag |
526 |
Q |
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| T |
8362346 |
agcatgaattgcatataacaatacatataatatagttttaaagtgtaaggtgaaaaatag |
8362405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 8361896 - 8362059
Alignment:
| Q |
34 |
aggaaagaaaagggttgaagacattgttaccttgtcatgattaatggtaatatatgacactaaaacactaactattacacgaatcccaatcttttcaact |
133 |
Q |
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| T |
8361896 |
aggaaagaaaaggattgaagacattgttatcttgtcatgattaatggtaatatatgacactaaaacactaactattacatgaatcccaatcttttcaact |
8361995 |
T |
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| Q |
134 |
acatttttctattccttactcgcccattaacttccttcaatttcaaactttctattaacatgac |
197 |
Q |
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| T |
8361996 |
acatttttctattccttactcgcccattaacttccttcaatttcaaactttctattaacatgac |
8362059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 341 - 473
Target Start/End: Original strand, 8371338 - 8371470
Alignment:
| Q |
341 |
tatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgtagctagcaacttccttgcaagtcatgaacttcaaaacta |
440 |
Q |
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| T |
8371338 |
tatcttacgttttcattttcgctcatggatccatgtggcattggaacttcagcatacatgtagctagcaacttccttgcaagtcttcatcatgaaaagta |
8371437 |
T |
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| Q |
441 |
agttccggtatataaggaaactgcagagcatga |
473 |
Q |
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| T |
8371438 |
agttcttcgatataaggcaactgtagagcatga |
8371470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 8369938 - 8370021
Alignment:
| Q |
341 |
tatcttacgttttcattttcgtttatgaatccatgtggcattggaacttgagcatacatgtagctagcaacttccttgcaagtc |
424 |
Q |
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| T |
8369938 |
tatcttacgttttcattttcgtccatggatccatgtgacattggaacttcatcatacatgtagctagcaacttccttgcaagtc |
8370021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 537 - 640
Target Start/End: Original strand, 8370159 - 8370262
Alignment:
| Q |
537 |
atacttatttttcccaaacatttctattcccttcaaacataattctttttgcaaaagtttccaattagatacactacacctcccttcaacttgtccttcc |
636 |
Q |
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| T |
8370159 |
atacctatttctcccaaacatttctattcccttcagacataaatctttctccaaaagtttccaagttgaaacacaagagttcccctcaacatgtccttcc |
8370258 |
T |
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| Q |
637 |
attg |
640 |
Q |
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|||| |
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| T |
8370259 |
attg |
8370262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 635
Target Start/End: Original strand, 8371559 - 8371657
Alignment:
| Q |
537 |
atacttatttttcccaaacatttctattcccttcaaacataattctttttgcaaaagtttccaattagatacactacacctcccttcaacttgtccttc |
635 |
Q |
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| T |
8371559 |
atacctatttctcccaaacatttctattcccttcatacatagttctttctccaaaagtttccaatttgaaacacaagagttcccctcaacatgtccttc |
8371657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 8361840 - 8361876
Alignment:
| Q |
10 |
cacagaaccaagttacttgcagttaggaaagaaaagg |
46 |
Q |
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| T |
8361840 |
cacagaaccaagttacttgcagttaggaaagaaaagg |
8361876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 601
Target Start/End: Original strand, 44827783 - 44827849
Alignment:
| Q |
535 |
ttatacttatttttcccaaacatttctattcccttcaaacataattctttttgcaaaagtttccaat |
601 |
Q |
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| T |
44827783 |
ttatacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaat |
44827849 |
T |
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