View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_5 (Length: 635)
Name: NF15415_low_5
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 251 - 452
Target Start/End: Complemental strand, 9230777 - 9230575
Alignment:
| Q |
251 |
ttgatctcatcagaaccattccaaacttctaaataattctttgatgaaattttaagtcacacacatcatcacacaataannnnnnncgtctatat--atc |
348 |
Q |
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| T |
9230777 |
ttgatctcatcagaaccattccaaacttctaaataattctttgatgagattttaagtcacacacaacatcacacaataatttttt-cgtcaatatctatc |
9230679 |
T |
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| Q |
349 |
atttggttcatttataaatgggtcttgattgtttcgtgagacataagttatttaatttatatgtttcattgtattcattaatcattacctactacttatt |
448 |
Q |
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| T |
9230678 |
atttggttcatttataaatgggtcttgattgtttcgtgagacataagttatttaatttatatgtttcattgtattcattaatcattacctactacttatt |
9230579 |
T |
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| Q |
449 |
ttca |
452 |
Q |
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|||| |
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| T |
9230578 |
ttca |
9230575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 15471570 - 15471646
Alignment:
| Q |
16 |
tccaacgtgaattgcatttaagtgagttacttttaactgccaaatgaattccaaaactgatggaattaactatcaaa |
92 |
Q |
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| T |
15471570 |
tccaatgtgaattgcattcaagtgagttgcgtctaattgtcaaatgaactccaaaactaatgaaattaattatcaaa |
15471646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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