View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15415_low_6 (Length: 613)
Name: NF15415_low_6
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Complemental strand, 39261587 - 39260994
Alignment:
| Q |
18 |
aaaacgacatcaaaaatcatattgaaacactcgaatccggttgcaaccttctaataaagctttgttcaactccactagaaatttttgttttagtcttatt |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261587 |
aaaacgacatcaaaaatcattttgaaacactcgaatccggttgcaaccttctaataaagctttgttcaactccactagaaatttttgttttagtcttatt |
39261488 |
T |
|
| Q |
118 |
ttgtattttagcaagtaaacatgannnnnnnn-----------atgtagggtatgtgtttattaactctaacagtatcactaccaatgttgagaccacca |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261487 |
ttgtattttagcaagtaaacatgacatgtctttgattttttttatgtagggtatgtgtttattaactctaacagtatcactaccaatgttgagaccacca |
39261388 |
T |
|
| Q |
207 |
ccatgtgctcaagggatagcagacaaggattgccaaaaagcttcatcgctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261387 |
gcatgtgctcaagggatagcagacaaggattgccaaaaagcttcatcgctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacag |
39261288 |
T |
|
| Q |
307 |
ggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggtgggt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
39261287 |
ggggaactaagcccaacatttccaccattggagcagaccaatttgatgagtttgagcctaaagagaggtcccaaaaactttcattctacaattggtgggt |
39261188 |
T |
|
| Q |
407 |
gttttacattttaattggaaccatttcagctcaaacaatattggtttacatacaagacaatgttggttttgcccttggctatgggattccaaccatattg |
506 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261187 |
gttttacattttaattggaaccatttcagctcaaacaatattggtttacatacaagacaatgttggttttgcccttggctatgggattccaaccatattg |
39261088 |
T |
|
| Q |
507 |
cttgttgtttccatattggtgtttgtgttaggtactccactttataggcatagattaccttctggaagtcctttaactagaatggttcaagtct |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261087 |
cttgttgtttccatattggtgtttgtgttaggtactccactttataggcatagattaccttctggaagtcctttaactagaatggttcaagtct |
39260994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 151 - 600
Target Start/End: Complemental strand, 39245847 - 39245398
Alignment:
| Q |
151 |
tgtagggtatgtgtttattaactctaacagtatcactaccaatgttgagaccaccaccatgtgctcaagggatagcagacaaggattgccaaaaagcttc |
250 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| |||||||| | | ||||||||||||||||||| |
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| T |
39245847 |
tgtagggaatgtgtttattgactctttcagtatcactaccaacgctgagaccaccaccatgtgctgtagggatagaaaaacaggattgccaaaaagcttc |
39245748 |
T |
|
| Q |
251 |
atcgctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaattt |
350 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||||||| ||||||||| |
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| T |
39245747 |
atcactacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaattaagcccagcatcaccacacttggagccgaccaattt |
39245648 |
T |
|
| Q |
351 |
gatgagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggtgggtgttttacattttaattggaaccatttcagctcaaacaatattgg |
450 |
Q |
| |
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|||||||| ||||| ||||| | ||| |||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||| ||||| |||| | |
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| T |
39245647 |
gatgagtttgagccgaaagagaagtctcaaaaactttccttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattag |
39245548 |
T |
|
| Q |
451 |
tttacatacaagacaatgttggttttgcccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttgtgttaggtactccacttta |
550 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||| |||| || || ||| |||| |
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| T |
39245547 |
tctacatacaagacaatgttggttttgcccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaattta |
39245448 |
T |
|
| Q |
551 |
taggcatagattaccttctggaagtcctttaactagaatggttcaagtct |
600 |
Q |
| |
|
||| |||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
39245447 |
tagacataaattgccttctggaagtcctttaactagaatggttcaagtct |
39245398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 154 - 582
Target Start/End: Complemental strand, 39251846 - 39251420
Alignment:
| Q |
154 |
agggtatgtgtttattaactctaacagtatcactaccaatgttgagaccaccaccatgtgctcaagggatagcagacaaggattgccaaaaagcttcatc |
253 |
Q |
| |
|
|||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
39251846 |
agggaatgtgtttattgactcttgcagtgtcactaccaatgctgagaccaccaccttgttctcaagggatagaagacaatgattgccaaaaagcttcatc |
39251747 |
T |
|
| Q |
254 |
gctacaaattggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| |||||| |||||||||||| |
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|
| T |
39251746 |
actacaaattggtattttcttctttgctttgtacatcattgcagcaggcac-ggggggattaagcccaacatctccacacctggagccgaccaatttgat |
39251648 |
T |
|
| Q |
354 |
gagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggtgggtgttttacattttaattggaaccatttcagctcaaacaatattggttt |
453 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| | |||| ||| |||| ||||| ||| ||||| ||| || | |
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| T |
39251647 |
gagtttgagcctaaagagaggtcccaaaaactttcctttttcaattggtgggtgttctgcattataactggaggcattttagccgaaacaggattagtct |
39251548 |
T |
|
| Q |
454 |
acatacaagacaatgttggttttgcccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttgtgttaggtactccactttatag |
553 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||| | |||||||||| |||| || || ||||||||||| |
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|
| T |
39251547 |
acatacaagacaatgttgg-tttgcccttggttatgggattccaaccatcttgcttgttttttcaacattggtgtttttgtttggaacaccactttatag |
39251449 |
T |
|
| Q |
554 |
gcatagattaccttctggaagtcctttaa |
582 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
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|
| T |
39251448 |
acatagattaccttctggaagccctttaa |
39251420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 39216484 - 39216344
Alignment:
| Q |
264 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagc |
363 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | ||| ||||| ||||| |||||||||||||| || || ||||||||||||||||| |||||||||| |
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|
| T |
39216484 |
ggtattttcttccttgccctgtacatcattgctgtaggaacaggaggaaccaagcccaacatttctacaatgggagcagaccaatttgacgagttcgagc |
39216385 |
T |
|
| Q |
364 |
ctaaagaaaggtcccaaaaactttccttctacaattggtgg |
404 |
Q |
| |
|
| ||||| || || | ||||||||||||| |||||||||| |
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| T |
39216384 |
ccaaagagagcacctataaactttccttcttcaattggtgg |
39216344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 39194785 - 39194645
Alignment:
| Q |
264 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagc |
363 |
Q |
| |
|
|||||||||||| | || ||||||||||||| | ||| ||||| ||||| ||||| |||||||| || || ||||||||||||||||| |||||||||| |
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|
| T |
39194785 |
ggtattttcttcctagccctgtacatcattgctgtaggaacaggaggaacaaagcctaacatttctacgatgggagcagaccaatttgacgagttcgagc |
39194686 |
T |
|
| Q |
364 |
ctaaagaaaggtcccaaaaactttccttctacaattggtgg |
404 |
Q |
| |
|
| ||||| ||| || | ||||||||||||| |||||||||| |
|
|
| T |
39194685 |
ccaaagagaggacctataaactttccttcttcaattggtgg |
39194645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 39178022 - 39177882
Alignment:
| Q |
264 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagc |
363 |
Q |
| |
|
|||||||||||| |||| |||| |||||||| | |||||||||||| || ||||| |||||||| || || ||||||||||||||||| |||||||||| |
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|
| T |
39178022 |
ggtattttcttccttgccctgtatatcattgccgtaggcacaggggggaccaagccaaacatttctacaatgggagcagaccaatttgacgagttcgagc |
39177923 |
T |
|
| Q |
364 |
ctaaagaaaggtcccaaaaactttccttctacaattggtgg |
404 |
Q |
| |
|
| ||||| || ||| | || ||||| |||| |||||||||| |
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|
| T |
39177922 |
ccaaagagagatcctataagctttctttcttcaattggtgg |
39177882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 285 - 404
Target Start/End: Complemental strand, 39224081 - 39223962
Alignment:
| Q |
285 |
tacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaaggtcccaaaaac |
384 |
Q |
| |
|
|||||| |||| | ||| ||||| ||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||| || | || | |
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|
| T |
39224081 |
tacatcgttgctgtaggaacaggaggaaccaagcccaacatttctacaatgggagcagaccaatttgacgagttcgagcctaaagagaggacctataagc |
39223982 |
T |
|
| Q |
385 |
tttccttctacaattggtgg |
404 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
39223981 |
tttccttcttcaattggtgg |
39223962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 39239911 - 39239820
Alignment:
| Q |
264 |
ggtattttcttctttgctttgtacatcattgcagcaggcacagggggaactaagcccaacatttccaccattggagcagaccaatttgatga |
355 |
Q |
| |
|
|||||||||||| |||| |||||||| |||| ||||||||| ||||| || ||||||||||| || || ||||| |||||||||||||| |
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| T |
39239911 |
ggtattttcttccttgccttgtacataattgttttaggcacaggtggaaccaaacccaacatttctactatgggagctgaccaatttgatga |
39239820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 372
Target Start/End: Original strand, 15765096 - 15765165
Alignment:
| Q |
303 |
acagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaa |
372 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| || |||||||||||||| || || |||||||||| |
|
|
| T |
15765096 |
acaggtggaaccaaacccaacatttccaccattggtgctgaccaatttgatgattttgaccctaaagaaa |
15765165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 33413113 - 33413006
Alignment:
| Q |
303 |
acagggggaactaagcccaacatttccaccattggagcagaccaatttgatgagttcgagcctaaagaaaggtcccaaaaactttccttctacaattggt |
402 |
Q |
| |
|
||||| ||||| || |||||||| || |||||||| ||||||||||||||||| || | |||||||||| || || |||||||| || | |||||||| |
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|
| T |
33413113 |
acaggtggaaccaaacccaacatctcaaccattggtgcagaccaatttgatgattttcatcctaaagaaaaatcacataaactttcatttttcaattggt |
33413014 |
T |
|
| Q |
403 |
gggtgttt |
410 |
Q |
| |
|
|| ||||| |
|
|
| T |
33413013 |
ggatgttt |
33413006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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